RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 SRSF5Q13243 272 aaKnown RBP14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 RNF212Q495C1 297 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 STAC2Q6ZMT1 411 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 TMPPEQ6ZT21 453 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 OR2L13Q8N349 312 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 OR5T1Q8NG75 326 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 ASB17Q8WXJ9 295 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 SPTSSAQ969W0 71 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 CMSS1Q9BQ75 279 aaKnown RBP14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 CHRDQ9H2X0 955 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 EHFQ9NZC4 300 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 UBE2J1Q9Y385 318 aaPredicted RBP14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 IGHV5-51A0A0C4DH38 117 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 H7C1Q1 480 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 PLPP2O43688 288 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 GLB1P16278 677 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 GALP22466 123 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 GRINAQ7Z429 371 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 CBLN2Q8IUK8 224 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 SPICQ8N5J4 248 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 FAM213BQ8TBF2 198 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 PCYT1BQ9Y5K3 369 aaPredicted RBP14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 LOC285556D6RIA3 1793 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 A0A1W2PPV9 198 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 PPP1R2P9O14990 202 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 YKT6O15498 198 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 BCL2L11O43521 198 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 ZNF44P15621 663 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 POU3F2P20265 443 aaPredicted RBP14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 BATFQ16520 125 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 MAMSTRQ6ZN01 415 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 SULF2Q8IWU5 870 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 C20orf141Q9NUB4 165 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 KCND3Q9UK17 655 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 KPTNQ9Y664 436 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 SPINT1O43278 529 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 TNFSF12O43508 249 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 TCN2P20062 427 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 TEX19Q8NA77 164 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 OR51B6Q9H340 312 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 PADI1Q9ULC6 663 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 COA3Q9Y2R0 106 aaPredicted RBP14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 SIGLEC5O15389 551 aa14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 NQO2P16083 231 aa14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 NPY4RP50391 375 aa14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 SIGLEC14Q08ET2 396 aa14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 ZXDCQ2QGD7 858 aaPredicted RBP14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 DCAF12Q5T6F0 453 aa14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 FAM57BQ71RH2 274 aa14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 MISPQ8IVT2 679 aa14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 HSD17B11Q8NBQ5 300 aa14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 OR4D11Q8NGI4 311 aa14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 C1orf198Q9H425 327 aa14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 FN3KRPQ9HA64 309 aa14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 TAF9BQ9HBM6 251 aa14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 SLC22A11Q9NSA0 550 aa14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 ING1Q9UK53 422 aaPredicted RBP14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 FBXO4Q9UKT5 387 aa14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 EP300Q09472 2414 aaPredicted RBP14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 RLFQ13129 1914 aa14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 PMP2P02689 132 aa14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 SLC2A1P11166 492 aa14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 CD79AP11912 226 aa14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 NME1P15531 152 aaKnown RBP14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 SERPINF1P36955 418 aa14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 RPL18Q07020 188 aaKnown RBP14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 GPR160Q9UJ42 338 aa14.77□□□□□ -0.04
CCDC88B-209ENST00000494080 PSME4Q14997 1843 aa14.77□□□□□ -0.05
CCDC88B-209ENST00000494080 FAM230AA0A1W2PPH8 454 aa14.77□□□□□ -0.05
CCDC88B-209ENST00000494080 SMCO3A2RU48 225 aa14.77□□□□□ -0.05
CCDC88B-209ENST00000494080 A6NLC8 198 aa14.77□□□□□ -0.05
CCDC88B-209ENST00000494080 SLC33A1O00400 549 aaPredicted RBP14.77□□□□□ -0.05
CCDC88B-209ENST00000494080 OR13C7P0DN81 318 aa14.77□□□□□ -0.05
CCDC88B-209ENST00000494080 DIO1P49895 249 aa14.77□□□□□ -0.05
CCDC88B-209ENST00000494080 FCRL6Q6DN72 434 aa14.77□□□□□ -0.05
CCDC88B-209ENST00000494080 LINC00518Q8N0U6 118 aa14.77□□□□□ -0.05
CCDC88B-209ENST00000494080 OR1S2Q8NGQ3 325 aa14.77□□□□□ -0.05
CCDC88B-209ENST00000494080 GPBAR1Q8TDU6 330 aa14.77□□□□□ -0.05
CCDC88B-209ENST00000494080 SPACA1Q9HBV2 294 aa14.77□□□□□ -0.05
CCDC88B-209ENST00000494080 RGPD3A6NKT7 1758 aaPredicted RBP14.77□□□□□ -0.05
CCDC88B-209ENST00000494080 ACKR1Q16570 336 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 IAH1Q2TAA2 248 aaPredicted RBP14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 MDGA2Q7Z553 956 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 DEFB123Q8N688 67 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 SLC30A7Q8NEW0 376 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 OR5D18Q8NGL1 313 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 RAB3CQ96E17 227 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 EIF4E2O60573 245 aaKnown RBP14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 SSR4P51571 173 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 MECP2P51608 486 aaKnown RBP14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 C21orf58P58505 322 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 FAM209BQ5JX69 171 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 RNLSQ5VYX0 342 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 ZNF626Q68DY1 528 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 TMEM91Q6ZNR0 172 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 RTTNQ86VV8 2226 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 PRAMEF25A6NGN4 478 aa14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 NUDT21O43809 227 aaKnown RBP14.76□□□□□ -0.05
CCDC88B-209ENST00000494080 LILRB5O75023 590 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms