RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 FBXL13Q8NEE6 735 aa1.82□□□□□ -2.12
PTPN4-212ENST00000488896 OR10AD1Q8NGE0 317 aa1.82□□□□□ -2.12
PTPN4-212ENST00000488896 PLPPR1Q8TBJ4 325 aa1.82□□□□□ -2.12
PTPN4-212ENST00000488896 SLC7A13Q8TCU3 470 aa1.82□□□□□ -2.12
PTPN4-212ENST00000488896 NT5C3BQ969T7 300 aa1.82□□□□□ -2.12
PTPN4-212ENST00000488896 OR5B12Q96R08 314 aa1.82□□□□□ -2.12
PTPN4-212ENST00000488896 LSM7Q9UK45 103 aaKnown RBP1.82□□□□□ -2.12
PTPN4-212ENST00000488896 TMCC3Q9ULS5 477 aa1.82□□□□□ -2.12
PTPN4-212ENST00000488896 SAMHD1Q9Y3Z3 626 aaKnown RBP1.82□□□□□ -2.12
PTPN4-212ENST00000488896 ANKRD12Q6UB98 2062 aa1.82□□□□□ -2.12
PTPN4-212ENST00000488896 PCNX2A6NKB5 2137 aa1.81□□□□□ -2.12
PTPN4-212ENST00000488896 IGHV7-4-1A0A0J9YVY3 117 aa1.81□□□□□ -2.12
PTPN4-212ENST00000488896 GLYATL1P3A0A0U1RQE8 302 aa1.81□□□□□ -2.12
PTPN4-212ENST00000488896 CEACAM18A8MTB9 384 aa1.81□□□□□ -2.12
PTPN4-212ENST00000488896 NDUFC2-KCTD14E9PQ53 114 aa1.81□□□□□ -2.12
PTPN4-212ENST00000488896 MANBAO00462 879 aa1.81□□□□□ -2.12
PTPN4-212ENST00000488896 KLHL2O95198 593 aa1.81□□□□□ -2.12
PTPN4-212ENST00000488896 SERPINA3P01011 423 aa1.81□□□□□ -2.12
PTPN4-212ENST00000488896 SERPIND1P05546 499 aa1.81□□□□□ -2.12
PTPN4-212ENST00000488896 MX1P20591 662 aa1.81□□□□□ -2.12
PTPN4-212ENST00000488896 TAGLN2P37802 199 aaKnown RBP1.81□□□□□ -2.12
PTPN4-212ENST00000488896 SYKP43405 635 aa1.81□□□□□ -2.12
PTPN4-212ENST00000488896 PRLHRP49683 370 aa1.81□□□□□ -2.12
PTPN4-212ENST00000488896 PLP1P60201 277 aa1.81□□□□□ -2.12
PTPN4-212ENST00000488896 MEF2CQ06413 473 aaPredicted RBP1.81□□□□□ -2.12
PTPN4-212ENST00000488896 TGM3Q08188 693 aa1.81□□□□□ -2.12
PTPN4-212ENST00000488896 ARL6IP6Q8N6S5 226 aa1.81□□□□□ -2.12
PTPN4-212ENST00000488896 COX18Q8N8Q8 333 aa1.81□□□□□ -2.12
PTPN4-212ENST00000488896 OR5B3Q8NH48 314 aa1.81□□□□□ -2.12
PTPN4-212ENST00000488896 PHOSPHO2Q8TCD6 241 aa1.81□□□□□ -2.12
PTPN4-212ENST00000488896 TUBGCP3Q96CW5 907 aa1.81□□□□□ -2.12
PTPN4-212ENST00000488896 GCOM2Q9BZD3 368 aaPredicted RBP1.81□□□□□ -2.12
PTPN4-212ENST00000488896 NT5C3AQ9H0P0 336 aa1.81□□□□□ -2.12
PTPN4-212ENST00000488896 DENND4AQ7Z401 1863 aa1.81□□□□□ -2.12
PTPN4-212ENST00000488896 SCN4AP35499 1836 aa1.8□□□□□ -2.12
PTPN4-212ENST00000488896 GABRR3A8MPY1 467 aa1.8□□□□□ -2.12
PTPN4-212ENST00000488896 NUPL2O15504 423 aaKnown RBP1.8□□□□□ -2.12
PTPN4-212ENST00000488896 CTSLP07711 333 aa1.8□□□□□ -2.12
PTPN4-212ENST00000488896 GGT1P19440 569 aa1.8□□□□□ -2.12
PTPN4-212ENST00000488896 CRYBB2P43320 205 aa1.8□□□□□ -2.12
PTPN4-212ENST00000488896 CSNK1EP49674 416 aaKnown RBP1.8□□□□□ -2.12
PTPN4-212ENST00000488896 RPL23AP62750 156 aaKnown RBP1.8□□□□□ -2.12
PTPN4-212ENST00000488896 FAM53BQ14153 422 aa1.8□□□□□ -2.12
PTPN4-212ENST00000488896 IHHQ14623 411 aa1.8□□□□□ -2.12
PTPN4-212ENST00000488896 ZMYND11Q15326 602 aa1.8□□□□□ -2.12
PTPN4-212ENST00000488896 TEX30Q5JUR7 227 aa1.8□□□□□ -2.12
PTPN4-212ENST00000488896 C16orf47Q6ZP98 133 aaPredicted RBP1.8□□□□□ -2.12
PTPN4-212ENST00000488896 Q6ZSR3 168 aa1.8□□□□□ -2.12
PTPN4-212ENST00000488896 NIPA1Q7RTP0 329 aa1.8□□□□□ -2.12
PTPN4-212ENST00000488896 NKAIN4Q8IVV8 208 aa1.8□□□□□ -2.12
PTPN4-212ENST00000488896 ZSCAN16Q9H4T2 348 aaPredicted RBP1.8□□□□□ -2.12
PTPN4-212ENST00000488896 IKZF2Q9UKS7 526 aa1.8□□□□□ -2.12
PTPN4-212ENST00000488896 VANGL2Q9ULK5 521 aa1.8□□□□□ -2.12
PTPN4-212ENST00000488896 ASB3Q9Y575 518 aa1.8□□□□□ -2.12
PTPN4-212ENST00000488896 KCNE3Q9Y6H6 103 aa1.8□□□□□ -2.12
PTPN4-212ENST00000488896 IGHV3-49A0A0A0MS15 119 aa1.79□□□□□ -2.12
PTPN4-212ENST00000488896 FAM240BA0A1B0GVZ2 78 aa1.79□□□□□ -2.12
PTPN4-212ENST00000488896 OR6C70A6NIJ9 312 aa1.79□□□□□ -2.12
PTPN4-212ENST00000488896 OR5H1A6NKK0 313 aa1.79□□□□□ -2.12
PTPN4-212ENST00000488896 NVLO15381 856 aaKnown RBP1.79□□□□□ -2.12
PTPN4-212ENST00000488896 EIF1BO60739 113 aaKnown RBP1.79□□□□□ -2.12
PTPN4-212ENST00000488896 DEDDO75618 318 aa1.79□□□□□ -2.12
PTPN4-212ENST00000488896 CST1P01037 141 aa1.79□□□□□ -2.12
PTPN4-212ENST00000488896 PSMB5P28074 263 aa1.79□□□□□ -2.12
PTPN4-212ENST00000488896 GPX4P36969 197 aaPredicted RBP1.79□□□□□ -2.12
PTPN4-212ENST00000488896 EIF1P41567 113 aaKnown RBP1.79□□□□□ -2.12
PTPN4-212ENST00000488896 RPL23P62829 140 aaKnown RBP1.79□□□□□ -2.12
PTPN4-212ENST00000488896 BST2Q10589 180 aaKnown RBP1.79□□□□□ -2.12
PTPN4-212ENST00000488896 DMC1Q14565 340 aa1.79□□□□□ -2.12
PTPN4-212ENST00000488896 KDELC1Q6UW63 502 aa1.79□□□□□ -2.12
PTPN4-212ENST00000488896 NBPF5PQ86XG9 351 aaPredicted RBP1.79□□□□□ -2.12
PTPN4-212ENST00000488896 SGPP2Q8IWX5 399 aa1.79□□□□□ -2.12
PTPN4-212ENST00000488896 SLC35G3Q8N808 338 aa1.79□□□□□ -2.12
PTPN4-212ENST00000488896 OR5T1Q8NG75 326 aa1.79□□□□□ -2.12
PTPN4-212ENST00000488896 ZFP3Q96NJ6 502 aa1.79□□□□□ -2.12
PTPN4-212ENST00000488896 MICU1Q9BPX6 476 aa1.79□□□□□ -2.12
PTPN4-212ENST00000488896 METTL7AQ9H8H3 244 aa1.79□□□□□ -2.12
PTPN4-212ENST00000488896 TMEM9BQ9NQ34 198 aa1.79□□□□□ -2.12
PTPN4-212ENST00000488896 ETNK2Q9NVF9 386 aa1.79□□□□□ -2.12
PTPN4-212ENST00000488896 EXTL2Q9UBQ6 330 aa1.79□□□□□ -2.12
PTPN4-212ENST00000488896 PISDQ9UG56 409 aa1.79□□□□□ -2.12
PTPN4-212ENST00000488896 ATAD2BQ9ULI0 1458 aa1.79□□□□□ -2.12
PTPN4-212ENST00000488896 ZNF407Q9C0G0 2248 aa1.79□□□□□ -2.12
PTPN4-212ENST00000488896 TSPOAP1O95153 1857 aa1.78□□□□□ -2.12
PTPN4-212ENST00000488896 KANK1Q14678 1352 aa1.78□□□□□ -2.12
PTPN4-212ENST00000488896 IGHV1-3A0A0C4DH29 117 aa1.78□□□□□ -2.12
PTPN4-212ENST00000488896 KRBOX1C9JBD0 128 aa1.78□□□□□ -2.12
PTPN4-212ENST00000488896 CLPXO76031 633 aa1.78□□□□□ -2.12
PTPN4-212ENST00000488896 SEMA3DO95025 777 aa1.78□□□□□ -2.12
PTPN4-212ENST00000488896 IGHV3-11P01762 117 aa1.78□□□□□ -2.12
PTPN4-212ENST00000488896 ERGP11308 486 aa1.78□□□□□ -2.12
PTPN4-212ENST00000488896 ZNF43P17038 809 aa1.78□□□□□ -2.12
PTPN4-212ENST00000488896 NCF2P19878 526 aaPredicted RBP1.78□□□□□ -2.12
PTPN4-212ENST00000488896 CCNHP51946 323 aaPredicted RBP1.78□□□□□ -2.12
PTPN4-212ENST00000488896 DDX39BQ13838 428 aaKnown RBP1.78□□□□□ -2.12
PTPN4-212ENST00000488896 QPRTQ15274 297 aa1.78□□□□□ -2.12
PTPN4-212ENST00000488896 DEFB134Q4QY38 66 aa1.78□□□□□ -2.12
PTPN4-212ENST00000488896 YIF1BQ5BJH7 314 aa1.78□□□□□ -2.12
PTPN4-212ENST00000488896 PRAMEF5Q5TYX0 476 aa1.78□□□□□ -2.12
PTPN4-212ENST00000488896 PRAMEF6Q5VXH4 476 aa1.78□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms