RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 NTAN1Q96AB6 310 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 EEF1AKMT3Q96AZ1 226 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 ECHDC3Q96DC8 303 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 SEH1LQ96EE3 360 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 GALNT14Q96FL9 552 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 CAMK2N2Q96S95 79 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 PKIBQ9C010 78 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 LGALS13Q9UHV8 139 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 TRMT112Q9UI30 125 aaKnown RBP1.09□□□□□ -2.23
SMC4-220ENST00000488017 SCN4AP35499 1836 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 SYNRGQ9UMZ2 1314 aa1.09□□□□□ -2.24
SMC4-220ENST00000488017 EIF4G1Q04637 1599 aaKnown RBP1.08□□□□□ -2.24
SMC4-220ENST00000488017 PEG3Q9GZU2 1588 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 DOCK8Q8NF50 2099 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 SYNJ2BP-COX16A0A087WUM0 186 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 IGKV1-8A0A0C4DH67 115 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 A0A1B0GW55 424 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 XKRY2A2RUG3 117 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 OR6C74A6NCV1 312 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 FAM47DPA6NHR8 397 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 OR2AG2A6NM03 316 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 ZNF716A6NP11 495 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 SMKR1H3BMG3 65 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 H7C417 338 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 BPY2O14599 106 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 LSM1O15116 133 aaKnown RBP1.08□□□□□ -2.24
SMC4-220ENST00000488017 SOCS1O15524 211 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 FKBP6O75344 327 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 REM1O75628 298 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 OR2J3O76001 311 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 CTSLP07711 333 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 ZNF735P0CB33 412 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 DUX4L2P0CJ85 424 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 DUX4L3P0CJ86 424 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 DUX4L5P0CJ88 424 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 DUX4L6P0CJ89 424 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 DUX4L7P0CJ90 424 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 C1GALT1C1LP0DN25 315 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 ATF6P18850 670 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 PBLDP30039 288 aaPredicted RBP1.08□□□□□ -2.24
SMC4-220ENST00000488017 FOXN2P32314 431 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 CD151P48509 253 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 ATP5IP56385 69 aaPredicted RBP1.08□□□□□ -2.24
SMC4-220ENST00000488017 STXBP1P61764 594 aaKnown RBP1.08□□□□□ -2.24
SMC4-220ENST00000488017 PPP1CBP62140 327 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 TGM3Q08188 693 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 IFT88Q13099 833 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 SELENBP1Q13228 472 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 SLC39A6Q13433 755 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 PIGHQ14442 188 aaPredicted RBP1.08□□□□□ -2.24
SMC4-220ENST00000488017 ZNF266Q14584 549 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 ALKBH6Q3KRA9 238 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 MPV17L2Q567V2 206 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 HSP90AB3PQ58FF7 597 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 PRAMEF20Q5VT98 475 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 C9orf135Q5VTT2 229 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 REEP3Q6NUK4 255 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 TAS2R42Q7RTR8 314 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 SLC16A13Q7RTY0 426 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 TMEM150AQ86TG1 271 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 CDKL3Q8IVW4 592 aaPredicted RBP1.08□□□□□ -2.24
SMC4-220ENST00000488017 GTPBP8Q8N3Z3 284 aaPredicted RBP1.08□□□□□ -2.24
SMC4-220ENST00000488017 COX18Q8N8Q8 333 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 LILRB4Q8NHJ6 448 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 ELMO1Q92556 727 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 ITFG2Q969R8 447 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 PTX4Q96A99 478 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 TPD52L3Q96J77 140 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 DNAJC1Q96KC8 554 aaKnown RBP1.08□□□□□ -2.24
SMC4-220ENST00000488017 ZNF317Q96PQ6 595 aaPredicted RBP1.08□□□□□ -2.24
SMC4-220ENST00000488017 HSD17B10Q99714 261 aaKnown RBP1.08□□□□□ -2.24
SMC4-220ENST00000488017 MICU1Q9BPX6 476 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 NUP58Q9BVL2 599 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 FGF23Q9GZV9 251 aaPredicted RBP1.08□□□□□ -2.24
SMC4-220ENST00000488017 ILKAPQ9H0C8 392 aaPredicted RBP1.08□□□□□ -2.24
SMC4-220ENST00000488017 FBXO6Q9NRD1 293 aaPredicted RBP1.08□□□□□ -2.24
SMC4-220ENST00000488017 HRASLS2Q9NWW9 162 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 DUX4Q9UBX2 424 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 MTFP1Q9UDX5 166 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 PITPNC1Q9UKF7 332 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 VANGL2Q9ULK5 521 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 HYOU1Q9Y4L1 999 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 KCNE3Q9Y6H6 103 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 TICRRQ7Z2Z1 1910 aa1.08□□□□□ -2.24
SMC4-220ENST00000488017 VIRMAQ69YN4 1812 aaKnown RBP1.08□□□□□ -2.24
SMC4-220ENST00000488017 SCRIBQ14160 1630 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 SMIM26A0A096LP01 95 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 IGHV1OR15-9A0A0B4J2B8 117 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 GOLGA8OA6NCC3 632 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 NCBP2LA6PVI3 153 aaKnown RBP1.07□□□□□ -2.24
SMC4-220ENST00000488017 GOLGA8NF8WBI6 632 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 BOLA2-SMG1P6H3BVE0 249 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 DNASE2O00115 360 aaPredicted RBP1.07□□□□□ -2.24
SMC4-220ENST00000488017 LGALS9O00182 355 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 NVLO15381 856 aaKnown RBP1.07□□□□□ -2.24
SMC4-220ENST00000488017 EIF4E2O60573 245 aaKnown RBP1.07□□□□□ -2.24
SMC4-220ENST00000488017 CLDN11O75508 207 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 SNX4O95219 450 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 H6PDO95479 791 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 HLA-DQB1P01920 261 aa1.07□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms