RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 NEU4Q8WWR8 484 aaPredicted RBP13.62□□□□□ -0.23
UPF3A-208ENST00000484246 PLEKHA8Q96JA3 519 aa13.62□□□□□ -0.23
UPF3A-208ENST00000484246 COX4I2Q96KJ9 171 aa13.62□□□□□ -0.23
UPF3A-208ENST00000484246 Q96MF0 132 aa13.62□□□□□ -0.23
UPF3A-208ENST00000484246 INTS14Q96SY0 518 aa13.62□□□□□ -0.23
UPF3A-208ENST00000484246 SYT3Q9BQG1 590 aa13.62□□□□□ -0.23
UPF3A-208ENST00000484246 MS4A5Q9H3V2 200 aa13.62□□□□□ -0.23
UPF3A-208ENST00000484246 MED20Q9H944 212 aa13.62□□□□□ -0.23
UPF3A-208ENST00000484246 WDR76Q9H967 626 aa13.62□□□□□ -0.23
UPF3A-208ENST00000484246 DYNLRB1Q9NP97 96 aa13.62□□□□□ -0.23
UPF3A-208ENST00000484246 MYEF2Q9P2K5 600 aaKnown RBP13.62□□□□□ -0.23
UPF3A-208ENST00000484246 CGGBP1Q9UFW8 167 aaPredicted RBP13.62□□□□□ -0.23
UPF3A-208ENST00000484246 GPR160Q9UJ42 338 aa13.62□□□□□ -0.23
UPF3A-208ENST00000484246 USF3Q68DE3 2245 aa13.62□□□□□ -0.23
UPF3A-208ENST00000484246 E9PQ18 207 aa13.61□□□□□ -0.23
UPF3A-208ENST00000484246 NGFP01138 241 aa13.61□□□□□ -0.23
UPF3A-208ENST00000484246 DBHP09172 617 aa13.61□□□□□ -0.23
UPF3A-208ENST00000484246 ALDH3A2P51648 485 aa13.61□□□□□ -0.23
UPF3A-208ENST00000484246 NUDT6P53370 316 aa13.61□□□□□ -0.23
UPF3A-208ENST00000484246 SNAPC1Q16533 368 aa13.61□□□□□ -0.23
UPF3A-208ENST00000484246 MOGQ16653 247 aa13.61□□□□□ -0.23
UPF3A-208ENST00000484246 RSPO1Q2MKA7 263 aaPredicted RBP13.61□□□□□ -0.23
UPF3A-208ENST00000484246 RHOUQ7L0Q8 258 aa13.61□□□□□ -0.23
UPF3A-208ENST00000484246 CXXC5Q7LFL8 322 aaKnown RBP13.61□□□□□ -0.23
UPF3A-208ENST00000484246 CPOQ8IVL8 374 aa13.61□□□□□ -0.23
UPF3A-208ENST00000484246 SLC25A40Q8TBP6 338 aa13.61□□□□□ -0.23
UPF3A-208ENST00000484246 KLF14Q8TD94 323 aaPredicted RBP13.61□□□□□ -0.23
UPF3A-208ENST00000484246 ST7LQ8TDW4 575 aa13.61□□□□□ -0.23
UPF3A-208ENST00000484246 SLC7A6Q92536 515 aa13.61□□□□□ -0.23
UPF3A-208ENST00000484246 PITX2Q99697 317 aa13.61□□□□□ -0.23
UPF3A-208ENST00000484246 RAB1BQ9H0U4 201 aa13.61□□□□□ -0.23
UPF3A-208ENST00000484246 OR51B6Q9H340 312 aa13.61□□□□□ -0.23
UPF3A-208ENST00000484246 TVP23BQ9NYZ1 205 aa13.61□□□□□ -0.23
UPF3A-208ENST00000484246 A0A1W2PPW3 197 aa13.6□□□□□ -0.23
UPF3A-208ENST00000484246 ZNF593O00488 134 aaPredicted RBP13.6□□□□□ -0.23
UPF3A-208ENST00000484246 EI24O14681 340 aa13.6□□□□□ -0.23
UPF3A-208ENST00000484246 PRKYO43930 277 aa13.6□□□□□ -0.23
UPF3A-208ENST00000484246 ERCC1P07992 297 aaPredicted RBP13.6□□□□□ -0.23
UPF3A-208ENST00000484246 SPARCP09486 303 aa13.6□□□□□ -0.23
UPF3A-208ENST00000484246 ACSM4P0C7M7 580 aa13.6□□□□□ -0.23
UPF3A-208ENST00000484246 CD99P14209 185 aa13.6□□□□□ -0.23
UPF3A-208ENST00000484246 GGTLC2Q14390 218 aa13.6□□□□□ -0.23
UPF3A-208ENST00000484246 SHFQ7M4L6 423 aa13.6□□□□□ -0.23
UPF3A-208ENST00000484246 APOBEC3DQ96AK3 386 aaPredicted RBP13.6□□□□□ -0.23
UPF3A-208ENST00000484246 C9orf16Q9BUW7 83 aa13.6□□□□□ -0.23
UPF3A-208ENST00000484246 C1QTNF5Q9BXJ0 243 aa13.6□□□□□ -0.23
UPF3A-208ENST00000484246 OR2J1Q9GZK6 312 aa13.6□□□□□ -0.23
UPF3A-208ENST00000484246 OR51V1Q9H2C8 321 aa13.6□□□□□ -0.23
UPF3A-208ENST00000484246 NKIRAS2Q9NYR9 191 aa13.6□□□□□ -0.23
UPF3A-208ENST00000484246 DUSP13Q9UII6 198 aa13.6□□□□□ -0.23
UPF3A-208ENST00000484246 FZR1Q9UM11 496 aa13.6□□□□□ -0.23
UPF3A-208ENST00000484246 CCDC182A6NF36 153 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 ZNF878C9JN71 531 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 CLPTM1O96005 669 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 ADH4P08319 380 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 ADRA2AP08913 450 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 GCH1P30793 250 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 LIPAP38571 399 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 MPV17P39210 176 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 RPS27P42677 84 aaKnown RBP13.59□□□□□ -0.23
UPF3A-208ENST00000484246 RAD23AP54725 363 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 RIPPLY3P57055 190 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 TMEM255AQ5JRV8 349 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 AADACL4Q5VUY2 407 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 CLEC2AQ6UVW9 174 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 FBXW12Q6X9E4 464 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 DCXRQ7Z4W1 244 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 CBR4Q8N4T8 237 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 BBS1Q8NFJ9 593 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 TMEM163Q8TC26 289 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 RNF133Q8WVZ7 376 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 STMN2Q93045 179 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 ZMYND19Q96E35 227 aaPredicted RBP13.59□□□□□ -0.23
UPF3A-208ENST00000484246 VRK1Q99986 396 aaPredicted RBP13.59□□□□□ -0.23
UPF3A-208ENST00000484246 CYSLTR2Q9NS75 346 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 TAAR3PQ9P1P4 343 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 GRIP1Q9Y3R0 1128 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 HIVEP1P15822 2718 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 F8P00451 2351 aa13.59□□□□□ -0.23
UPF3A-208ENST00000484246 TRIM64A6NGJ6 449 aa13.58□□□□□ -0.24
UPF3A-208ENST00000484246 TRIM64BA6NI03 449 aa13.58□□□□□ -0.24
UPF3A-208ENST00000484246 C17orf100A8MU93 164 aa13.58□□□□□ -0.24
UPF3A-208ENST00000484246 M0R135 149 aa13.58□□□□□ -0.24
UPF3A-208ENST00000484246 NDUFS8O00217 210 aa13.58□□□□□ -0.24
UPF3A-208ENST00000484246 SSX4O60224 188 aa13.58□□□□□ -0.24
UPF3A-208ENST00000484246 MT-ND5P03915 603 aa13.58□□□□□ -0.24
UPF3A-208ENST00000484246 RAC2P15153 192 aa13.58□□□□□ -0.24
UPF3A-208ENST00000484246 KITLGP21583 273 aa13.58□□□□□ -0.24
UPF3A-208ENST00000484246 POLR2IP36954 125 aaKnown RBP13.58□□□□□ -0.24
UPF3A-208ENST00000484246 ALDH3B1P43353 468 aa13.58□□□□□ -0.24
UPF3A-208ENST00000484246 MMP15P51511 669 aa13.58□□□□□ -0.24
UPF3A-208ENST00000484246 TPTEP56180 551 aa13.58□□□□□ -0.24
UPF3A-208ENST00000484246 MRPS11P82912 194 aaKnown RBP13.58□□□□□ -0.24
UPF3A-208ENST00000484246 TNK1Q13470 666 aa13.58□□□□□ -0.24
UPF3A-208ENST00000484246 MAD2L1BPQ15013 274 aaPredicted RBP13.58□□□□□ -0.24
UPF3A-208ENST00000484246 NKPD1Q17RQ9 610 aa13.58□□□□□ -0.24
UPF3A-208ENST00000484246 PCGF3Q3KNV8 242 aa13.58□□□□□ -0.24
UPF3A-208ENST00000484246 SPATA46Q5T0L3 261 aa13.58□□□□□ -0.24
UPF3A-208ENST00000484246 LCN1P1Q5VSP4 162 aa13.58□□□□□ -0.24
UPF3A-208ENST00000484246 NXNL2Q5VZ03 156 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms