RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, human

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPHP4-208	ENST00000478423	OR52H1	Q8NGJ2	320 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	SNX18	Q96RF0	628 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	CACNA1H	O95180	2353 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	CYR61	O00622	381 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	S100A2	P29034	98 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	C2orf76	Q3KRA6	126 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	WIPI1	Q5MNZ9	446 aa	Predicted RBP	12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	TEX19	Q8NA77	164 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	OTOS	Q8NHW6	89 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	KCNE4	Q8WWG9	221 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	C11orf40	Q8WZ69	217 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	PELI1	Q96FA3	418 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	VSTM2L	Q96N03	204 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	ERVMER34-1	Q9H9K5	563 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	AKIP1	Q9NQ31	210 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	POM121C	A8CG34	1229 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	HSPB2	A8KAH6	182 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	RRP8	O43159	456 aa	Known RBP	12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	FBXO24	O75426	580 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	SIX6	O95475	246 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	EIF4E	P06730	217 aa	Known RBP	12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	GRP	P07492	148 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	NFYA	P23511	347 aa	Predicted RBP	12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	ZNF141	Q15928	474 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	HSPB2	Q16082	182 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	TBC1D28	Q2M2D7	210 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	SLC25A35	Q3KQZ1	300 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	ANKRD37	Q7Z713	158 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	EGFL6	Q8IUX8	553 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	FYTTD1	Q96QD9	318 aa	Known RBP	12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	PBOV1	Q9GZY1	135 aa		12.83	□□□□□ -0.36
NPHP4-208	ENST00000478423	HRK	O00198	91 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	IFNA1	P01562	189 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	C1QC	P02747	245 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	CSF3	P09919	207 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	ZNF728	P0DKX0	622 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	ANXA7	P20073	488 aa	Known RBP	12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	TUBG1	P23258	451 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	PEBP1	P30086	187 aa	Known RBP	12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	CDA	P32320	146 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	NOVA1	P51513	510 aa	Known RBP	12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	DSCR4	P56555	118 aa	Predicted RBP	12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	AADACL3	Q5VUY0	350 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	ALKAL2	Q6UX46	152 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	OR5AS1	Q8N127	324 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	OR8B4	Q96RC9	309 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	BCO1	Q9HAY6	547 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	PLXNA1	Q9UIW2	1896 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	IGHV3-64D	A0A0J9YX35	117 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	C4orf47	A7E2U8	309 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423		F8W036	122 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	IMPA2	O14732	288 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	BLOC1S1	P78537	153 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	FMOD	Q06828	376 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	ZNF681	Q96N22	645 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	MOGAT1	Q96PD6	335 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	MED18	Q9BUE0	208 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	NPAP1	Q9NZP6	1156 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	EPOP	A6NHQ4	379 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	SMLR1	H3BR10	107 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	ETV6	P41212	452 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	BTG1	P62324	171 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	RPL23A	P62750	156 aa	Known RBP	12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	SPEM2	Q0P670	501 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	BAK1	Q16611	211 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	ZAR1	Q86SH2	424 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	SARAF	Q96BY9	339 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	CCDC86	Q9H6F5	360 aa	Known RBP	12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	PCYT1B	Q9Y5K3	369 aa	Predicted RBP	12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	FCAR	P24071	287 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	OPCML	Q14982	345 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	CEACAM16	Q2WEN9	425 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	AADACL4	Q5VUY2	407 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	WDR5B	Q86VZ2	330 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	PCDHB10	Q9UN67	800 aa		12.82	□□□□□ -0.36
NPHP4-208	ENST00000478423	TNFSF12-TNFSF13	A0A0A6YY99	330 aa		12.81	□□□□□ -0.36
NPHP4-208	ENST00000478423	OR6C65	A6NJZ3	312 aa		12.81	□□□□□ -0.36
NPHP4-208	ENST00000478423	EFS	O43281	561 aa		12.81	□□□□□ -0.36
NPHP4-208	ENST00000478423	TNFSF12	O43508	249 aa		12.81	□□□□□ -0.36
NPHP4-208	ENST00000478423	MT-CO3	P00414	261 aa		12.81	□□□□□ -0.36
NPHP4-208	ENST00000478423	FGF9	P31371	208 aa	Predicted RBP	12.81	□□□□□ -0.36
NPHP4-208	ENST00000478423	OGFOD3	Q6PK18	319 aa		12.81	□□□□□ -0.36
NPHP4-208	ENST00000478423	OR51F2	Q8NH61	342 aa		12.81	□□□□□ -0.36
NPHP4-208	ENST00000478423	OR2V1	Q8NHB1	315 aa		12.81	□□□□□ -0.36
NPHP4-208	ENST00000478423	PCNP	Q8WW12	178 aa	Known RBP	12.81	□□□□□ -0.36
NPHP4-208	ENST00000478423	ZNF285	Q96NJ3	590 aa		12.81	□□□□□ -0.36
NPHP4-208	ENST00000478423	GLTP	Q9NZD2	209 aa		12.81	□□□□□ -0.36
NPHP4-208	ENST00000478423	C5orf49	A4QMS7	147 aa		12.81	□□□□□ -0.36
NPHP4-208	ENST00000478423	PMS2P2	O95744	297 aa		12.81	□□□□□ -0.36
NPHP4-208	ENST00000478423	ZNF133	P52736	654 aa	Predicted RBP	12.81	□□□□□ -0.36
NPHP4-208	ENST00000478423	LSM11	P83369	360 aa	Known RBP eCLIP	12.81	□□□□□ -0.36
NPHP4-208	ENST00000478423	CD226	Q15762	336 aa		12.81	□□□□□ -0.36
NPHP4-208	ENST00000478423	TAF9	Q16594	264 aa		12.81	□□□□□ -0.36
NPHP4-208	ENST00000478423	DEFB109B	Q30KR1	87 aa		12.81	□□□□□ -0.36
NPHP4-208	ENST00000478423	PRSS35	Q8N3Z0	413 aa		12.81	□□□□□ -0.36
NPHP4-208	ENST00000478423	NUDCD2	Q8WVJ2	157 aa		12.81	□□□□□ -0.36
NPHP4-208	ENST00000478423	SGK3	Q96BR1	496 aa		12.81	□□□□□ -0.36
NPHP4-208	ENST00000478423	SCPEP1	Q9HB40	452 aa		12.81	□□□□□ -0.36
NPHP4-208	ENST00000478423	C1orf123	Q9NWV4	160 aa		12.81	□□□□□ -0.36
NPHP4-208	ENST00000478423	PLA2G3	Q9NZ20	509 aa		12.81	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms