RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 ITGA2P17301 1181 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 SRD5A1P18405 259 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 RHCEP18577 417 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 MSR1P21757 451 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 DRD4P21917 467 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 ACHEP22303 614 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 IGFBP5P24593 272 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 LAP3P28838 519 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 GPR6P46095 362 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 GDI2P50395 445 aaKnown RBP5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 ERVS71-1P61550 626 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 ERVK-25P63136 954 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 PSG4Q00888 419 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 KRT72Q14CN4 511 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 PCGF3Q3KNV8 242 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 ALKBH6Q3KRA9 238 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 FGD3Q5JSP0 725 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 ELFN2Q5R3F8 820 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 GLYATQ6IB77 296 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 TMEM154Q6P9G4 183 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 ARL9Q6T311 187 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 FOXL2NBQ6ZUU3 175 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 SPATC1Q76KD6 591 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 CXXC5Q7LFL8 322 aaKnown RBP5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 FAM122BQ7Z309 247 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 C1orf174Q8IYL3 243 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 CLDN22Q8N7P3 220 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 ARIH2OSQ8N7S6 290 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 OR1J1Q8NGS3 322 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 AKR7LQ8NHP1 331 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 SLC7A13Q8TCU3 470 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 ITFG2Q969R8 447 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 POM121L2Q96KW2 1035 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 ZNF570Q96NI8 536 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 WACQ9BTA9 647 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 ZNF416Q9BWM5 594 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 OR2H1Q9GZK4 316 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 WNT5BQ9H1J7 359 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 GORASP2Q9H8Y8 452 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 DCAF13Q9NV06 445 aaKnown RBP5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 NDUFAF4Q9P032 175 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 PFDN2Q9UHV9 154 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 MAGEL2Q9UJ55 1249 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 AURKCQ9UQB9 309 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 TIMM10BQ9Y5J6 103 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 DNHD1Q96M86 4753 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 LOC100509620A0A075B734 347 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 TEX13CA0A0J9YWL9 993 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 PRSS37A4D1T9 235 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 H3BSA7 217 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 H7C1C5 153 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 NCR1O76036 304 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 NDUFB2O95178 105 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 IGHV3-13P01766 116 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 HSD17B1P14061 328 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 ZNF26P17031 533 aaPredicted RBP5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 COL8A2P25067 703 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 GCH1P30793 250 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 SDHAP31040 664 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 IL2RGP31785 369 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 LIPAP38571 399 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 MAGEB1P43366 347 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 OMPP47874 163 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 ARHGDIAP52565 204 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 CDH15P55291 814 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 TMEM33P57088 247 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 SMIM11AP58511 58 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 LCN6P62502 163 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 GNGT1P63211 74 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 CCL8P80075 99 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 GLO1Q04760 184 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 FOXL1Q12952 345 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 KRR1Q13601 381 aaKnown RBP5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 CCNIQ14094 377 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 ENDOGQ14249 297 aaKnown RBP5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 TRIP10Q15642 601 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 ZNF718Q3SXZ3 478 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 MESTQ5EB52 335 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 SAMD4BQ5PRF9 694 aaKnown RBP5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 FAM120AOSQ5T036 256 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 MBNL2Q5VZF2 373 aaKnown RBP5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 CD276Q5ZPR3 534 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 GPR139Q6DWJ6 353 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 TSEN54Q7Z6J9 526 aaKnown RBP5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 ADCK1Q86TW2 530 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 ZNF101Q8IZC7 436 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 PGAM4Q8N0Y7 254 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 RNF148Q8N7C7 305 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 FAM86B1Q8N7N1 296 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 SPATA3Q8NHX4 192 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 TMEM158Q8WZ71 300 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 CFHR4Q92496 578 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 YIPF5Q969M3 257 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 MCUR1Q96AQ8 359 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 PYURFQ96I23 114 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 RSRC1Q96IZ7 334 aaKnown RBP5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 C7orf34Q96L11 122 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 C4orf45Q96LM5 186 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 Q96M85 177 aa5.79□□□□□ -1.48
CCDC88A-213ENST00000476903 OR14A2Q96R54 314 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms