RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 CTSFQ9UBX1 484 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 CLN8Q9UBY8 286 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 TBC1D24Q9ULP9 559 aa1.7□□□□□ -2.14
CCDC88A-212ENST00000474059 PHLPP2Q6ZVD8 1323 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 IGSF9BQ9UPX0 1349 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 KCNE1BA0A087WTH5 132 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 K7EMT4 169 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 L7N2F9 121 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 RAD51CO43502 376 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 AQP8O94778 261 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 FGFR1OPO95684 399 aaKnown RBP1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 LSM8O95777 96 aaKnown RBP1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 SFTPCP11686 197 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 CTRB1P17538 263 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 RAB3AP20336 220 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 U2AF2P26368 475 aaKnown RBP eCLIP1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 SLC1A2P43004 574 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 RPS5P46782 204 aaKnown RBP1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 P2RX1P51575 399 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 UBE2MP61081 183 aaKnown RBP1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 UBE2NP61088 152 aaKnown RBP1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 SYCNQ0VAF6 134 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 QPRTQ15274 297 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 FAM71E1Q6IPT2 247 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 PRMT9Q6P2P2 845 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 SPESP1Q6UW49 350 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 MRPL55Q7Z7F7 128 aaKnown RBP1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 CBLN2Q8IUK8 224 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 RIMKLAQ8IXN7 391 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 METTL13Q8N6R0 699 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 CHST4Q8NCG5 386 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 BPIFCQ8NFQ6 507 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 OR56A4Q8NGH8 313 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 OR52E2Q8NGJ4 325 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 PIFOQ8TCI5 191 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 AGR3Q8TD06 166 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 PHF10Q8WUB8 498 aaKnown RBP1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 NTAN1Q96AB6 310 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 ANKRD60Q9BZ19 345 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 SLC7A5P2Q9GIP4 190 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 ELOVL6Q9H5J4 265 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 TMEM38AQ9H6F2 299 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 EDA2RQ9HAV5 297 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 HMG20AQ9NP66 347 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 MRPS30Q9NP92 439 aaKnown RBP1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 ACP6Q9NPH0 428 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 ZNF355PQ9NSJ1 428 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 PDP1Q9P0J1 537 aaPredicted RBP1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 RABL2AQ9UBK7 228 aaPredicted RBP1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 TRMT112Q9UI30 125 aaKnown RBP1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 YTHDF2Q9Y5A9 579 aaKnown RBP1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 OTOGLQ3ZCN5 2332 aa1.69□□□□□ -2.14
CCDC88A-212ENST00000474059 UBN2Q6ZU65 1347 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 WDR19Q8NEZ3 1342 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 TRAV25A0A0B4J276 109 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 H7C417 338 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 M0R3G1 203 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 B4GALT5O43286 388 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 GCM2O75603 506 aaPredicted RBP1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 ASGR1P07306 291 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 CTSLP07711 333 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 MRPL3P09001 348 aaKnown RBP1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 CLTAP09496 248 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 PSMC3P17980 439 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 CSNK2A2P19784 350 aaPredicted RBP1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 SSTR5P35346 364 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 NBL1P41271 181 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 HCAR3P49019 387 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 PPP1CBP62140 327 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 RPS23P62266 143 aaKnown RBP1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 PRR3P79522 188 aaKnown RBP1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 IRF8Q02556 426 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 LOXL1Q08397 574 aaPredicted RBP1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 IFT88Q13099 833 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 IRF4Q15306 451 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 SNRNP35Q16560 246 aaKnown RBP1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 FAM78AQ5JUQ0 283 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 TPTE2P1Q5T6R2 138 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 KPRPQ5T749 579 aaPredicted RBP1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 STUMQ69YW2 141 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 NANOGP8Q6NSW7 305 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 MBOAT2Q6ZWT7 520 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 ABHD12BQ7Z5M8 362 aaPredicted RBP1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 WDR86Q86TI4 376 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 KATNAL2Q8IYT4 538 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 JAGN1Q8N5M9 183 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 COMMD1Q8N668 190 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 RNF182Q8N6D2 247 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 C11orf72Q8NBR9 251 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 BBOF1Q8ND07 529 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 OR2L8Q8NGY9 312 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 OR52E5Q8NH55 327 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 C15orf40Q8WUR7 153 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 APH1BQ8WW43 257 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 RBMXL1Q96E39 390 aaKnown RBP1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 ZNF317Q96PQ6 595 aaPredicted RBP1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 TIMM17AQ99595 171 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 FOXC2Q99958 501 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 LZTS2Q9BRK4 669 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 MRM3Q9HC36 420 aaKnown RBP1.68□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms