RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 HDHD2Q9H0R4 259 aa12.78□□□□□ -0.36
COL9A3-209ENST00000469852 OR51B6Q9H340 312 aa12.78□□□□□ -0.36
COL9A3-209ENST00000469852 CENPMQ9NSP4 180 aa12.78□□□□□ -0.36
COL9A3-209ENST00000469852 DDX28Q9NUL7 540 aaKnown RBP12.78□□□□□ -0.36
COL9A3-209ENST00000469852 LAMP5Q9UJQ1 280 aa12.78□□□□□ -0.36
COL9A3-209ENST00000469852 FBXL3Q9UKT7 428 aa12.78□□□□□ -0.36
COL9A3-209ENST00000469852 EXOGQ9Y2C4 368 aaKnown RBP12.78□□□□□ -0.36
COL9A3-209ENST00000469852 MYRFQ9Y2G1 1151 aa12.78□□□□□ -0.36
COL9A3-209ENST00000469852 ABCA12Q86UK0 2595 aa12.77□□□□□ -0.36
COL9A3-209ENST00000469852 A0A1W2PQL4 384 aaPredicted RBP12.77□□□□□ -0.37
COL9A3-209ENST00000469852 CRYAAP02489 173 aa12.77□□□□□ -0.37
COL9A3-209ENST00000469852 FAM157BP0CG42 384 aa12.77□□□□□ -0.37
COL9A3-209ENST00000469852 OPRL1P41146 370 aa12.77□□□□□ -0.37
COL9A3-209ENST00000469852 GDI2P50395 445 aaKnown RBP12.77□□□□□ -0.37
COL9A3-209ENST00000469852 KRTAP10-9P60411 292 aa12.77□□□□□ -0.37
COL9A3-209ENST00000469852 CXCR4P61073 352 aa12.77□□□□□ -0.37
COL9A3-209ENST00000469852 ZNF85Q03923 595 aa12.77□□□□□ -0.37
COL9A3-209ENST00000469852 POU4F2Q12837 409 aa12.77□□□□□ -0.37
COL9A3-209ENST00000469852 MSMPQ1L6U9 139 aa12.77□□□□□ -0.37
COL9A3-209ENST00000469852 TBC1D28Q2M2D7 210 aa12.77□□□□□ -0.37
COL9A3-209ENST00000469852 KRT80Q6KB66 452 aa12.77□□□□□ -0.37
COL9A3-209ENST00000469852 LRRN1Q6UXK5 716 aa12.77□□□□□ -0.37
COL9A3-209ENST00000469852 NAA40Q86UY6 237 aa12.77□□□□□ -0.37
COL9A3-209ENST00000469852 ZNF454Q8N9F8 522 aa12.77□□□□□ -0.37
COL9A3-209ENST00000469852 OR10H4Q8NGA5 316 aa12.77□□□□□ -0.37
COL9A3-209ENST00000469852 OR52I1Q8NGK6 324 aa12.77□□□□□ -0.37
COL9A3-209ENST00000469852 C14orf79Q96F83 325 aa12.77□□□□□ -0.37
COL9A3-209ENST00000469852 CDH20Q9HBT6 801 aa12.77□□□□□ -0.37
COL9A3-209ENST00000469852 MRPS18AQ9NVS2 196 aaKnown RBP12.77□□□□□ -0.37
COL9A3-209ENST00000469852 SLCO1C1Q9NYB5 712 aa12.77□□□□□ -0.37
COL9A3-209ENST00000469852 UBAP1Q9NZ09 502 aa12.77□□□□□ -0.37
COL9A3-209ENST00000469852 ATPIF1Q9UII2 106 aa12.77□□□□□ -0.37
COL9A3-209ENST00000469852 TACC2O95359 2948 aa12.77□□□□□ -0.37
COL9A3-209ENST00000469852 C5orf63A6NC05 138 aa12.76□□□□□ -0.37
COL9A3-209ENST00000469852 ZNF878C9JN71 531 aa12.76□□□□□ -0.37
COL9A3-209ENST00000469852 E7EQL1 145 aa12.76□□□□□ -0.37
COL9A3-209ENST00000469852 F5H5K5 113 aa12.76□□□□□ -0.37
COL9A3-209ENST00000469852 GPRIN2O60269 458 aa12.76□□□□□ -0.37
COL9A3-209ENST00000469852 NGFP01138 241 aa12.76□□□□□ -0.37
COL9A3-209ENST00000469852 PTHP01270 115 aa12.76□□□□□ -0.37
COL9A3-209ENST00000469852 OTX1P32242 354 aaPredicted RBP12.76□□□□□ -0.37
COL9A3-209ENST00000469852 ATP6V1E1P36543 226 aa12.76□□□□□ -0.37
COL9A3-209ENST00000469852 ERVS71-1P61550 626 aa12.76□□□□□ -0.37
COL9A3-209ENST00000469852 NKX6-1P78426 367 aaPredicted RBP12.76□□□□□ -0.37
COL9A3-209ENST00000469852 GALK2Q01415 458 aa12.76□□□□□ -0.37
COL9A3-209ENST00000469852 MVKQ03426 396 aa12.76□□□□□ -0.37
COL9A3-209ENST00000469852 C6orf141Q5SZD1 244 aa12.76□□□□□ -0.37
COL9A3-209ENST00000469852 RFPL4BQ6ZWI9 263 aa12.76□□□□□ -0.37
COL9A3-209ENST00000469852 TMEM200AQ86VY9 491 aa12.76□□□□□ -0.37
COL9A3-209ENST00000469852 BPIFB6Q8NFQ5 453 aa12.76□□□□□ -0.37
COL9A3-209ENST00000469852 SGCDQ92629 289 aa12.76□□□□□ -0.37
COL9A3-209ENST00000469852 GGHQ92820 318 aa12.76□□□□□ -0.37
COL9A3-209ENST00000469852 ZNF649Q9BS31 505 aa12.76□□□□□ -0.37
COL9A3-209ENST00000469852 COPS4Q9BT78 406 aa12.76□□□□□ -0.37
COL9A3-209ENST00000469852 CLEC4MQ9H2X3 399 aaPredicted RBP12.76□□□□□ -0.37
COL9A3-209ENST00000469852 POFUT1Q9H488 388 aa12.76□□□□□ -0.37
COL9A3-209ENST00000469852 RPL36Q9Y3U8 105 aaKnown RBP12.76□□□□□ -0.37
COL9A3-209ENST00000469852 ATP23Q9Y6H3 246 aa12.76□□□□□ -0.37
COL9A3-209ENST00000469852 SNTNA6NMZ2 147 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 ZNF670-ZNF695F2Z2N8 137 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 SLC1A7O00341 560 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 DENRO43583 198 aaKnown RBP12.75□□□□□ -0.37
COL9A3-209ENST00000469852 SMPD2O60906 423 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 FAM20BO75063 409 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 GOSR1O95249 250 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 IGHA1P01876 353 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 ACSM4P0C7M7 580 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 OR2T7P0C7T2 308 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 NR4A1P22736 598 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 PRKXP51817 358 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 RAB40BQ12829 278 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 SNTB2Q13425 540 aaKnown RBP12.75□□□□□ -0.37
COL9A3-209ENST00000469852 ZNF672Q499Z4 452 aaPredicted RBP12.75□□□□□ -0.37
COL9A3-209ENST00000469852 ZNF322Q6U7Q0 402 aaPredicted RBP12.75□□□□□ -0.37
COL9A3-209ENST00000469852 PLEKHG7Q6ZR37 379 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 IL17RDQ8NFM7 739 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 OR1J2Q8NGS2 313 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 OR2T27Q8NH04 317 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 AKAP1Q92667 903 aaKnown RBP eCLIP12.75□□□□□ -0.37
COL9A3-209ENST00000469852 C4orf45Q96LM5 186 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 OR8B4Q96RC9 309 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 KCNS3Q9BQ31 491 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 PLEKHF2Q9H8W4 249 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 PLCXD1Q9NUJ7 323 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 PAK1IP1Q9NWT1 392 aaPredicted RBP12.75□□□□□ -0.37
COL9A3-209ENST00000469852 MRM2Q9UI43 246 aaKnown RBP12.75□□□□□ -0.37
COL9A3-209ENST00000469852 PSORS1C1Q9UIG5 152 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 POU2F3Q9UKI9 436 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 GRIP1Q9Y3R0 1128 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 LRP12Q9Y561 859 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 APCP25054 2843 aa12.75□□□□□ -0.37
COL9A3-209ENST00000469852 M0R135 149 aa12.74□□□□□ -0.37
COL9A3-209ENST00000469852 H2BFMP0C1H6 154 aa12.74□□□□□ -0.37
COL9A3-209ENST00000469852 SLC2A1P11166 492 aa12.74□□□□□ -0.37
COL9A3-209ENST00000469852 THBS4P35443 961 aa12.74□□□□□ -0.37
COL9A3-209ENST00000469852 ROM1Q03395 351 aa12.74□□□□□ -0.37
COL9A3-209ENST00000469852 ECH1Q13011 328 aa12.74□□□□□ -0.37
COL9A3-209ENST00000469852 ZNF684Q5T5D7 378 aa12.74□□□□□ -0.37
COL9A3-209ENST00000469852 VHLLQ6RSH7 139 aa12.74□□□□□ -0.37
COL9A3-209ENST00000469852 KRT77Q7Z794 578 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms