RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 TIMD4Q96H15 378 aa18.03■□□□□ 0.48
HMGB3-205ENST00000455596 COQ7Q99807 217 aa18.03■□□□□ 0.48
HMGB3-205ENST00000455596 REEP1Q9H902 201 aa18.03■□□□□ 0.48
HMGB3-205ENST00000455596 TAS2R1Q9NYW7 299 aa18.03■□□□□ 0.48
HMGB3-205ENST00000455596 IL20Q9NYY1 176 aa18.03■□□□□ 0.48
HMGB3-205ENST00000455596 TREM2Q9NZC2 230 aa18.03■□□□□ 0.48
HMGB3-205ENST00000455596 TMEFF2Q9UIK5 374 aaPredicted RBP18.03■□□□□ 0.48
HMGB3-205ENST00000455596 CACNG2Q9Y698 323 aa18.03■□□□□ 0.48
HMGB3-205ENST00000455596 FAM157AC9JC47 383 aa18.02■□□□□ 0.48
HMGB3-205ENST00000455596 HLA-DQA2P01906 255 aa18.02■□□□□ 0.48
HMGB3-205ENST00000455596 CD55P08174 381 aa18.02■□□□□ 0.48
HMGB3-205ENST00000455596 PCMT1P22061 227 aa18.02■□□□□ 0.48
HMGB3-205ENST00000455596 PPP1R8Q12972 351 aaKnown RBP18.02■□□□□ 0.48
HMGB3-205ENST00000455596 AVPI1Q5T686 147 aa18.02■□□□□ 0.48
HMGB3-205ENST00000455596 CORO6Q6QEF8 472 aa18.02■□□□□ 0.48
HMGB3-205ENST00000455596 RASSF6Q6ZTQ3 369 aa18.02■□□□□ 0.48
HMGB3-205ENST00000455596 GLCCI1Q86VQ1 547 aa18.02■□□□□ 0.48
HMGB3-205ENST00000455596 AQP11Q8NBQ7 271 aa18.02■□□□□ 0.48
HMGB3-205ENST00000455596 OR5L1Q8NGL2 311 aa18.02■□□□□ 0.48
HMGB3-205ENST00000455596 CCL17Q92583 94 aa18.02■□□□□ 0.48
HMGB3-205ENST00000455596 PTP4A1Q93096 173 aa18.02■□□□□ 0.48
HMGB3-205ENST00000455596 CCDC124Q96CT7 223 aaKnown RBP18.02■□□□□ 0.48
HMGB3-205ENST00000455596 HAVCR1Q96D42 359 aa18.02■□□□□ 0.48
HMGB3-205ENST00000455596 CDADC1Q9BWV3 514 aa18.02■□□□□ 0.48
HMGB3-205ENST00000455596 SAMHD1Q9Y3Z3 626 aaKnown RBP18.02■□□□□ 0.48
HMGB3-205ENST00000455596 ANK3Q12955 4377 aaKnown RBP18.02■□□□□ 0.47
HMGB3-205ENST00000455596 BHLHE40O14503 412 aa18.01■□□□□ 0.47
HMGB3-205ENST00000455596 THBS2P35442 1172 aa18.01■□□□□ 0.47
HMGB3-205ENST00000455596 LMO4P61968 165 aa18.01■□□□□ 0.47
HMGB3-205ENST00000455596 TNFAIP6P98066 277 aaPredicted RBP18.01■□□□□ 0.47
HMGB3-205ENST00000455596 SLC3A1Q07837 685 aa18.01■□□□□ 0.47
HMGB3-205ENST00000455596 DBPQ10586 325 aaPredicted RBP18.01■□□□□ 0.47
HMGB3-205ENST00000455596 CDK5R2Q13319 367 aa18.01■□□□□ 0.47
HMGB3-205ENST00000455596 MICAQ29983 383 aa18.01■□□□□ 0.47
HMGB3-205ENST00000455596 SLC18B1Q6NT16 456 aa18.01■□□□□ 0.47
HMGB3-205ENST00000455596 LINC00346Q8IVM7 164 aa18.01■□□□□ 0.47
HMGB3-205ENST00000455596 OR2AJ1Q8NGZ0 328 aa18.01■□□□□ 0.47
HMGB3-205ENST00000455596 RAB1CQ92928 201 aa18.01■□□□□ 0.47
HMGB3-205ENST00000455596 APOBEC3DQ96AK3 386 aaPredicted RBP18.01■□□□□ 0.47
HMGB3-205ENST00000455596 CLPTM1LQ96KA5 538 aa18.01■□□□□ 0.47
HMGB3-205ENST00000455596 THTPAQ9BU02 230 aa18.01■□□□□ 0.47
HMGB3-205ENST00000455596 PLA2G12AQ9BZM1 189 aa18.01■□□□□ 0.47
HMGB3-205ENST00000455596 TBC1D23Q9NUY8 699 aa18.01■□□□□ 0.47
HMGB3-205ENST00000455596 WIPI2Q9Y4P8 454 aa18.01■□□□□ 0.47
HMGB3-205ENST00000455596 U3KQV3 271 aa18.01■□□□□ 0.47
HMGB3-205ENST00000455596 UBOX5O94941 541 aa18■□□□□ 0.47
HMGB3-205ENST00000455596 MSMBP08118 114 aa18■□□□□ 0.47
HMGB3-205ENST00000455596 RAP2AP10114 183 aa18■□□□□ 0.47
HMGB3-205ENST00000455596 RAC2P15153 192 aa18■□□□□ 0.47
HMGB3-205ENST00000455596 TNFSF4P23510 183 aa18■□□□□ 0.47
HMGB3-205ENST00000455596 OR51F2Q8NH61 342 aa18■□□□□ 0.47
HMGB3-205ENST00000455596 TMEM186Q96B77 213 aa18■□□□□ 0.47
HMGB3-205ENST00000455596 RAB39BQ96DA2 213 aa18■□□□□ 0.47
HMGB3-205ENST00000455596 ZNF665Q9H7R5 613 aa18■□□□□ 0.47
HMGB3-205ENST00000455596 LPAR2Q9HBW0 351 aa18■□□□□ 0.47
HMGB3-205ENST00000455596 VNN3Q9NY84 501 aa18■□□□□ 0.47
HMGB3-205ENST00000455596 PTTG3PQ9NZH4 202 aa18■□□□□ 0.47
HMGB3-205ENST00000455596 ANPEPP15144 967 aa17.99■□□□□ 0.47
HMGB3-205ENST00000455596 TRAP1Q12931 704 aaKnown RBP17.99■□□□□ 0.47
HMGB3-205ENST00000455596 FBXW12Q6X9E4 464 aa17.99■□□□□ 0.47
HMGB3-205ENST00000455596 CFAP77Q6ZQR2 320 aa17.99■□□□□ 0.47
HMGB3-205ENST00000455596 Q6ZR03 302 aa17.99■□□□□ 0.47
HMGB3-205ENST00000455596 TRPM8Q7Z2W7 1104 aa17.99■□□□□ 0.47
HMGB3-205ENST00000455596 CYB561A3Q8NBI2 242 aa17.99■□□□□ 0.47
HMGB3-205ENST00000455596 OR2Z1Q8NG97 314 aa17.99■□□□□ 0.47
HMGB3-205ENST00000455596 OR8D4Q8NGM9 314 aa17.99■□□□□ 0.47
HMGB3-205ENST00000455596 OR2T4Q8NH00 348 aa17.99■□□□□ 0.47
HMGB3-205ENST00000455596 BCAS4Q8TDM0 211 aa17.99■□□□□ 0.47
HMGB3-205ENST00000455596 DDOQ99489 341 aa17.99■□□□□ 0.47
HMGB3-205ENST00000455596 PITX2Q99697 317 aa17.99■□□□□ 0.47
HMGB3-205ENST00000455596 TSSK6Q9BXA6 273 aa17.99■□□□□ 0.47
HMGB3-205ENST00000455596 DGCR6LQ9BY27 220 aa17.99■□□□□ 0.47
HMGB3-205ENST00000455596 FAM53CQ9NYF3 392 aa17.99■□□□□ 0.47
HMGB3-205ENST00000455596 CYB5R1Q9UHQ9 305 aa17.99■□□□□ 0.47
HMGB3-205ENST00000455596 KCNG2Q9UJ96 466 aa17.99■□□□□ 0.47
HMGB3-205ENST00000455596 BAIAP2Q9UQB8 552 aa17.99■□□□□ 0.47
HMGB3-205ENST00000455596 RNF212BA8MTL3 300 aa17.98■□□□□ 0.47
HMGB3-205ENST00000455596 ACOT8O14734 319 aa17.98■□□□□ 0.47
HMGB3-205ENST00000455596 PHF1O43189 567 aaPredicted RBP17.98■□□□□ 0.47
HMGB3-205ENST00000455596 ZNF823P16415 610 aa17.98■□□□□ 0.47
HMGB3-205ENST00000455596 TNFRSF1AP19438 455 aa17.98■□□□□ 0.47
HMGB3-205ENST00000455596 PYCR1P32322 319 aa17.98■□□□□ 0.47
HMGB3-205ENST00000455596 GGT2P36268 569 aa17.98■□□□□ 0.47
HMGB3-205ENST00000455596 ECH1Q13011 328 aa17.98■□□□□ 0.47
HMGB3-205ENST00000455596 GK3PQ14409 553 aa17.98■□□□□ 0.47
HMGB3-205ENST00000455596 SPRNQ5BIV9 151 aa17.98■□□□□ 0.47
HMGB3-205ENST00000455596 PEG10Q86TG7 708 aaKnown RBP17.98■□□□□ 0.47
HMGB3-205ENST00000455596 LNX2Q8N448 690 aa17.98■□□□□ 0.47
HMGB3-205ENST00000455596 PROKR2Q8NFJ6 384 aa17.98■□□□□ 0.47
HMGB3-205ENST00000455596 TMEM158Q8WZ71 300 aa17.98■□□□□ 0.47
HMGB3-205ENST00000455596 ATF6BQ99941 703 aa17.98■□□□□ 0.47
HMGB3-205ENST00000455596 HIF1ANQ9NWT6 349 aa17.98■□□□□ 0.47
HMGB3-205ENST00000455596 MRPL22Q9NWU5 206 aaKnown RBP17.98■□□□□ 0.47
HMGB3-205ENST00000455596 SOX14O95416 240 aa17.97■□□□□ 0.47
HMGB3-205ENST00000455596 CST1P01037 141 aa17.97■□□□□ 0.47
HMGB3-205ENST00000455596 SRP14P37108 136 aaKnown RBP17.97■□□□□ 0.47
HMGB3-205ENST00000455596 ERFP50548 548 aa17.97■□□□□ 0.47
HMGB3-205ENST00000455596 HLXQ14774 488 aaPredicted RBP17.97■□□□□ 0.47
HMGB3-205ENST00000455596 ACSM5Q6NUN0 579 aa17.97■□□□□ 0.47
HMGB3-205ENST00000455596 OR5AS1Q8N127 324 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms