RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 MED18Q9BUE0 208 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 SLC38A1Q9H2H9 487 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 A4GALTQ9NPC4 353 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 NGBQ9NPG2 151 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 CHRNA9Q9UGM1 479 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 ANGPT4Q9Y264 503 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 HDGFL3Q9Y3E1 203 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 DOCK7Q96N67 2140 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 CACNA1DQ01668 2161 aa5.51□□□□□ -1.53
USP40-202ENST00000409945 C17orf51A8MQB3 221 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 C16orf97H3BN30 126 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 FAAHO00519 579 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 GPR171O14626 319 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 MRASO14807 208 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 CASQ2O14958 399 aaPredicted RBP5.5□□□□□ -1.53
USP40-202ENST00000409945 SS18L1O75177 396 aaPredicted RBP5.5□□□□□ -1.53
USP40-202ENST00000409945 STAMBPO95630 424 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 NPPAP01160 153 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 ETS2P15036 469 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 CD79BP40259 229 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 SLC1A3P43003 542 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 IDH2P48735 452 aaKnown RBP5.5□□□□□ -1.53
USP40-202ENST00000409945 RBBP4Q09028 425 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 TRAP1Q12931 704 aaKnown RBP5.5□□□□□ -1.53
USP40-202ENST00000409945 ZNF239Q16600 458 aaKnown RBP5.5□□□□□ -1.53
USP40-202ENST00000409945 SYT14P1Q58G82 188 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 SAMD4BQ5PRF9 694 aaKnown RBP5.5□□□□□ -1.53
USP40-202ENST00000409945 MRPL2Q5T653 305 aaKnown RBP5.5□□□□□ -1.53
USP40-202ENST00000409945 REP15Q6BDI9 236 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 WBP2NLQ6ICG8 309 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 TRAT1Q6PIZ9 186 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 PLEKHM3Q6ZWE6 761 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 SSX8Q7RTT4 187 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 GBGT1Q8N5D6 347 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 DRAXINQ8NBI3 349 aaPredicted RBP5.5□□□□□ -1.53
USP40-202ENST00000409945 FAM71CQ8NEG0 241 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 PIGXQ8TBF5 258 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 RASSF5Q8WWW0 418 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 PYDC1Q8WXC3 89 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 SLC35B4Q969S0 331 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 ASB9Q96DX5 294 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 LURAP1Q96LR2 239 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 TAPBPLQ9BX59 468 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 GID8Q9NWU2 228 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 NPAP1Q9NZP6 1156 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 ZNF443Q9Y2A4 671 aaPredicted RBP5.5□□□□□ -1.53
USP40-202ENST00000409945 ANKHD1Q8IWZ3 2542 aaKnown RBP5.5□□□□□ -1.53
USP40-202ENST00000409945 IGLV5-37A0A075B6J1 123 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 A0A0J9YW62 118 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 H0YC42 278 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 ZNF208O43345 1280 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 GAGE7O76087 117 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 OPN1LWP04000 364 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 YES1P07947 543 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 TFPTP0C1Z6 253 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 GAGE12FP0CL80 117 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 GAGE12GP0CL81 117 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 GAGE12IP0CL82 117 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 PSME3P61289 254 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 SLC35A1P78382 337 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 CDK6Q00534 326 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 RASGEF1BQ0VAM2 473 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 GAGE1Q13065 139 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 GAGE4Q13068 117 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 EXOC3L2Q2M3D2 409 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 NDUFAF6Q330K2 333 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 DHRS7BQ6IAN0 325 aaPredicted RBP5.5□□□□□ -1.53
USP40-202ENST00000409945 C5orf46Q6UWT4 87 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 IZUMO2Q6UXV1 221 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 TMPPEQ6ZT21 453 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 ZNF100Q8IYN0 542 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 CADM2Q8N3J6 435 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 MOSPD2Q8NHP6 518 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 STARD4Q96DR4 205 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 AURKBQ96GD4 344 aaPredicted RBP5.5□□□□□ -1.53
USP40-202ENST00000409945 HOPXQ9BPY8 73 aaPredicted RBP5.5□□□□□ -1.53
USP40-202ENST00000409945 ECSITQ9BQ95 431 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 VCXQ9H320 206 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 TMEM38AQ9H6F2 299 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 BCL2L10Q9HD36 194 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 RNF150Q9ULK6 438 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 TRAPPC4Q9Y296 219 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 AP3M1Q9Y2T2 418 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 HCFC1P51610 2035 aa5.5□□□□□ -1.53
USP40-202ENST00000409945 CREBBPQ92793 2442 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 ITPR2Q14571 2701 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 TMED7-TICAM2A0A0A6YYA0 188 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 FAM90A10PA6NDY2 464 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 ACOT8O14734 319 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 TNFSF13O75888 250 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 IFNA14P01570 189 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 GPIP06744 558 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 PRSS2P07478 247 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 RPS4Y1P22090 263 aaKnown RBP5.49□□□□□ -1.53
USP40-202ENST00000409945 IL32P24001 234 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 IFNA8P32881 189 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 OR2B6P58173 313 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 SNRPEP62304 92 aaKnown RBP5.49□□□□□ -1.53
USP40-202ENST00000409945 TUBA1BP68363 451 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 LTBQ06643 244 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms