RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 NAP1L6A6NFF2 107 aa13.25□□□□□ -0.29
CBX3-202ENST00000396386 TERTO14746 1132 aaKnown RBP13.25□□□□□ -0.29
CBX3-202ENST00000396386 XRCC3O43542 346 aa13.25□□□□□ -0.29
CBX3-202ENST00000396386 CTAG2O75638 210 aa13.25□□□□□ -0.29
CBX3-202ENST00000396386 GSTT2BP0CG30 244 aa13.25□□□□□ -0.29
CBX3-202ENST00000396386 HTR2CP28335 458 aa13.25□□□□□ -0.29
CBX3-202ENST00000396386 ZNF133P52736 654 aaPredicted RBP13.25□□□□□ -0.29
CBX3-202ENST00000396386 RRAS2P62070 204 aaPredicted RBP13.25□□□□□ -0.29
CBX3-202ENST00000396386 HES3Q5TGS1 186 aa13.25□□□□□ -0.29
CBX3-202ENST00000396386 DHRS13Q6UX07 377 aa13.25□□□□□ -0.29
CBX3-202ENST00000396386 YRDCQ86U90 279 aaKnown RBP13.25□□□□□ -0.29
CBX3-202ENST00000396386 TMEM123Q8N131 208 aa13.25□□□□□ -0.29
CBX3-202ENST00000396386 PSMF1Q92530 271 aa13.25□□□□□ -0.29
CBX3-202ENST00000396386 DMRTB1Q96MA1 342 aa13.25□□□□□ -0.29
CBX3-202ENST00000396386 ZNF385AQ96PM9 386 aaKnown RBP13.25□□□□□ -0.29
CBX3-202ENST00000396386 SRXN1Q9BYN0 137 aa13.25□□□□□ -0.29
CBX3-202ENST00000396386 RANGRFQ9HD47 186 aaPredicted RBP13.25□□□□□ -0.29
CBX3-202ENST00000396386 DIABLOQ9NR28 239 aa13.25□□□□□ -0.29
CBX3-202ENST00000396386 DMDP11532 3685 aa13.24□□□□□ -0.29
CBX3-202ENST00000396386 CACNA1HO95180 2353 aa13.24□□□□□ -0.29
CBX3-202ENST00000396386 TRAV6A0A075B6T7 132 aa13.24□□□□□ -0.29
CBX3-202ENST00000396386 A0A1B0GVI7 797 aa13.24□□□□□ -0.29
CBX3-202ENST00000396386 GGT3PA6NGU5 568 aa13.24□□□□□ -0.29
CBX3-202ENST00000396386 SYT7O43581 403 aa13.24□□□□□ -0.29
CBX3-202ENST00000396386 LMX1BO60663 402 aa13.24□□□□□ -0.29
CBX3-202ENST00000396386 WDPCPO95876 746 aa13.24□□□□□ -0.29
CBX3-202ENST00000396386 CD37P11049 281 aa13.24□□□□□ -0.29
CBX3-202ENST00000396386 MSR1P21757 451 aa13.24□□□□□ -0.29
CBX3-202ENST00000396386 GUCA1AP43080 201 aaPredicted RBP13.24□□□□□ -0.29
CBX3-202ENST00000396386 EFNB2P52799 333 aa13.24□□□□□ -0.29
CBX3-202ENST00000396386 LSM6P62312 80 aaKnown RBP13.24□□□□□ -0.29
CBX3-202ENST00000396386 CD83Q01151 205 aa13.24□□□□□ -0.29
CBX3-202ENST00000396386 FOXL2NBQ6ZUU3 175 aa13.24□□□□□ -0.29
CBX3-202ENST00000396386 ADGRE4PQ86SQ3 457 aa13.24□□□□□ -0.29
CBX3-202ENST00000396386 LUZP2Q86TE4 346 aa13.24□□□□□ -0.29
CBX3-202ENST00000396386 OR51A2Q8NGJ7 313 aa13.24□□□□□ -0.29
CBX3-202ENST00000396386 SLC25A28Q96A46 364 aa13.24□□□□□ -0.29
CBX3-202ENST00000396386 ZNF486Q96H40 463 aaPredicted RBP13.24□□□□□ -0.29
CBX3-202ENST00000396386 SFXN2Q96NB2 322 aa13.24□□□□□ -0.29
CBX3-202ENST00000396386 OR2B2Q9GZK3 357 aa13.24□□□□□ -0.29
CBX3-202ENST00000396386 KCNK15Q9H427 330 aa13.24□□□□□ -0.29
CBX3-202ENST00000396386 ZNF275Q9NSD4 429 aaPredicted RBP13.24□□□□□ -0.29
CBX3-202ENST00000396386 CGGBP1Q9UFW8 167 aaPredicted RBP13.24□□□□□ -0.29
CBX3-202ENST00000396386 N6AMT1Q9Y5N5 214 aa13.24□□□□□ -0.29
CBX3-202ENST00000396386 TMEM272A0A1B0GTI8 110 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 ANKRD20A5PA0PJZ0 165 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 C7orf66A4D0T2 115 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 SMAD9O15198 467 aaKnown RBP13.23□□□□□ -0.29
CBX3-202ENST00000396386 CASRP41180 1078 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 CCR6P51684 374 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 RAC3P60763 192 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 GRB2P62993 217 aaKnown RBP13.23□□□□□ -0.29
CBX3-202ENST00000396386 SPOCK1Q08629 439 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 SGCAQ16586 387 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 C2orf76Q3KRA6 126 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 OLFML2AQ68BL7 652 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 BTN2A1Q7KYR7 527 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 GGNQ86UU5 652 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 TCTE3Q8IZS6 198 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 PHF21AQ96BD5 680 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 SF3B5Q9BWJ5 86 aaKnown RBP13.23□□□□□ -0.29
CBX3-202ENST00000396386 BEX2Q9BXY8 128 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 FAM117AQ9C073 453 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 NELFAQ9H3P2 528 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 HRASLSQ9HDD0 168 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 PNRC2Q9NPJ4 139 aaKnown RBP13.23□□□□□ -0.29
CBX3-202ENST00000396386 DEPPQ9NTK1 212 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 MRPL15Q9P015 296 aaKnown RBP13.23□□□□□ -0.29
CBX3-202ENST00000396386 ABI3Q9P2A4 366 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 BOKQ9UMX3 212 aaPredicted RBP13.23□□□□□ -0.29
CBX3-202ENST00000396386 MRPS18CQ9Y3D5 142 aaKnown RBP13.23□□□□□ -0.29
CBX3-202ENST00000396386 LOC390937A0A1W2PQ73 354 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 RER1O15258 196 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 GALR2O43603 387 aaPredicted RBP13.23□□□□□ -0.29
CBX3-202ENST00000396386 RFPL3SP0C7P2 107 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 CNR1P21554 472 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 ENPP1P22413 925 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 GDF1P27539 372 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 SUCLG1P53597 346 aaKnown RBP13.23□□□□□ -0.29
CBX3-202ENST00000396386 RAG2P55895 527 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 PHYHD1Q5SRE7 291 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 GLYATL3Q5SZD4 288 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 ABHD17BQ5VST6 288 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 JAGN1Q8N5M9 183 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 FGGYQ96C11 551 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 INTS12Q96CB8 462 aaKnown RBP13.23□□□□□ -0.29
CBX3-202ENST00000396386 FOXRED1Q96CU9 486 aaPredicted RBP13.23□□□□□ -0.29
CBX3-202ENST00000396386 SCMH1Q96GD3 660 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 FYTTD1Q96QD9 318 aaKnown RBP13.23□□□□□ -0.29
CBX3-202ENST00000396386 ZNF416Q9BWM5 594 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 ULBP2Q9BZM5 246 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 ZFP64Q9NPA5 681 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 MCUBQ9NWR8 336 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 ING3Q9NXR8 418 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 LRFN1Q9P244 771 aa13.23□□□□□ -0.29
CBX3-202ENST00000396386 MRPS18BQ9Y676 258 aaKnown RBP13.23□□□□□ -0.29
CBX3-202ENST00000396386 A0A0A6YYJ9 748 aa13.22□□□□□ -0.29
CBX3-202ENST00000396386 H2AFB2P0C5Z0 115 aa13.22□□□□□ -0.29
CBX3-202ENST00000396386 PTHLHP12272 177 aa13.22□□□□□ -0.29
CBX3-202ENST00000396386 BDKRB2P30411 391 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms