RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 SEMA4FO95754 770 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 SLC35A1P78382 337 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 PJVKQ0ZLH3 352 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 FAM209AQ5JX71 171 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 TCTEX1D1Q8N7M0 179 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 DERL3Q96Q80 235 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 OR7C2O60412 319 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 ZNF468Q5VIY5 522 aaPredicted RBP10.82□□□□□ -0.68
SYNPO-202ENST00000394243 STAC2Q6ZMT1 411 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 SLC16A11Q8NCK7 471 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 CXorf58Q96LI9 332 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 LTN1O94822 1766 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 B3GALT4O96024 378 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 IL5P05113 134 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 SMIM6P0DI80 62 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 CT45A10P0DMU9 189 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 EPXP11678 715 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 AVPR2P30518 371 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 PIGPP57054 158 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 PFN3P60673 137 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 DCAF7P61962 342 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 GUCA2AQ02747 115 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 ZNF154Q13106 437 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 MED25Q71SY5 747 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 SPACA5Q96QH8 159 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 ZNF355PQ9NSJ1 428 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 GPR160Q9UJ42 338 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 RCL1Q9Y2P8 373 aaKnown RBP10.82□□□□□ -0.68
SYNPO-202ENST00000394243 hCG_1809904A0A1W2PP81 198 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 A0A1W2PR64 198 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 A0A1W2PRV1 198 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 ZNF732B4DXR9 585 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 ZNF195O14628 629 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 DEGS1O15121 323 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 OPRM1P35372 400 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 RUNX3Q13761 415 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 ZNF718Q3SXZ3 478 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 FAM71E1Q6IPT2 247 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 TFAP2EQ6VUC0 442 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 Q6ZSR6 202 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 SHARPINQ9H0F6 387 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 PSENENQ9NZ42 101 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 TAAR2Q9P1P5 351 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 DNMT3BQ9UBC3 853 aaKnown RBP10.82□□□□□ -0.68
SYNPO-202ENST00000394243 MYH14Q7Z406 1995 aaKnown RBP10.82□□□□□ -0.68
SYNPO-202ENST00000394243 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.82□□□□□ -0.68
SYNPO-202ENST00000394243 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.82□□□□□ -0.68
SYNPO-202ENST00000394243 COX5AP20674 150 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 SDHBP21912 280 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 RPL24P83731 157 aaKnown RBP10.82□□□□□ -0.68
SYNPO-202ENST00000394243 CNEP1R1Q8N9A8 125 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 ZNF383Q8NA42 475 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 ORAI1Q96D31 301 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 CMC2Q9NRP2 79 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 UBR1Q8IWV7 1749 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 MEIKINA0A087WXM9 373 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 PRAMEF25A6NGN4 478 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 TIMM8AO60220 97 aaPredicted RBP10.82□□□□□ -0.68
SYNPO-202ENST00000394243 DEFA4P12838 97 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 KCNJ3P48549 501 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 PRAMEF5Q5TYX0 476 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 PRAMEF6Q5VXH4 476 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 Q6ZN92 141 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 APH1AQ96BI3 265 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 ASIC5Q9NY37 505 aa10.82□□□□□ -0.68
SYNPO-202ENST00000394243 TCRBV16S1A1N1A0A5B0 115 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 AAED1Q7RTV5 226 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 OR2AE1Q8NHA4 323 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 FAM210BQ96KR6 192 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 OR8B4Q96RC9 309 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 C11orf49Q9H6J7 331 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 FBXO34Q9NWN3 711 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 ZNF207O43670 478 aaKnown RBP10.81□□□□□ -0.68
SYNPO-202ENST00000394243 OR2B11Q5JQS5 317 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 XAF1Q6GPH4 301 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 C5orf46Q6UWT4 87 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 ZNF595Q8IYB9 648 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 ANKLE1Q8NAG6 615 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 ABHD16AO95870 558 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 PCBP3P57721 371 aaKnown RBP10.81□□□□□ -0.68
SYNPO-202ENST00000394243 VHLLQ6RSH7 139 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 TMEM64Q6YI46 380 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 RFLNAQ6ZTI6 216 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 SLC35A4Q96G79 324 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 INSM2Q96T92 566 aaPredicted RBP10.81□□□□□ -0.68
SYNPO-202ENST00000394243 ZDHHC5Q9C0B5 715 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 PLEKHB1Q9UF11 243 aaPredicted RBP10.81□□□□□ -0.68
SYNPO-202ENST00000394243 IL17BQ9UHF5 180 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 IGKV6D-21A0A0A0MT36 114 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 M0R082 166 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 RGS13O14921 159 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 CA12O43570 354 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 ZFAND5O76080 213 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 ZNF17P17021 662 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 MFSD12Q6NUT3 480 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 ELOVL1Q9BW60 279 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 KLF16Q9BXK1 252 aaPredicted RBP10.81□□□□□ -0.68
SYNPO-202ENST00000394243 KIR2DS1A0A191URI9 304 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 EDN1P05305 212 aa10.81□□□□□ -0.68
SYNPO-202ENST00000394243 KIR2DS4P43632 304 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms