RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 SLC6A8P48029 635 aa9.69□□□□□ -0.86
NEDD9-201ENST00000379433 ZNF181Q2M3W8 571 aa9.69□□□□□ -0.86
NEDD9-201ENST00000379433 TMEM225Q6GV28 225 aa9.69□□□□□ -0.86
NEDD9-201ENST00000379433 WDFY1Q8IWB7 410 aa9.69□□□□□ -0.86
NEDD9-201ENST00000379433 OR2T4Q8NH00 348 aa9.69□□□□□ -0.86
NEDD9-201ENST00000379433 SNAPC3Q92966 411 aa9.69□□□□□ -0.86
NEDD9-201ENST00000379433 CMKLR1Q99788 373 aa9.69□□□□□ -0.86
NEDD9-201ENST00000379433 C11orf54Q9H0W9 315 aaPredicted RBP9.69□□□□□ -0.86
NEDD9-201ENST00000379433 OR51M1Q9H341 326 aa9.69□□□□□ -0.86
NEDD9-201ENST00000379433 KCNK15Q9H427 330 aa9.69□□□□□ -0.86
NEDD9-201ENST00000379433 KLHL21Q9UJP4 597 aa9.69□□□□□ -0.86
NEDD9-201ENST00000379433 B3GNT3Q9Y2A9 372 aa9.69□□□□□ -0.86
NEDD9-201ENST00000379433 ALG5Q9Y673 324 aa9.69□□□□□ -0.86
NEDD9-201ENST00000379433 TPRP12270 2363 aaKnown RBP9.68□□□□□ -0.86
NEDD9-201ENST00000379433 TMEM200CA6NKL6 621 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 VSTM2BA6NLU5 285 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 A8MVM7 634 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 SMAD7O15105 426 aaKnown RBP9.68□□□□□ -0.86
NEDD9-201ENST00000379433 RAB3BP20337 219 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 CDAP32320 146 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 ACTC1P68032 377 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 ACTA1P68133 377 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 MFSD13AQ14CX5 517 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 TMEM81Q6P7N7 255 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 DHRS13Q6UX07 377 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 NDUFAF7Q7L592 441 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 GRINAQ7Z429 371 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 WDR5BQ86VZ2 330 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 COMMD2Q86X83 199 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 FAM71CQ8NEG0 241 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 CPNE4Q96A23 557 aaPredicted RBP9.68□□□□□ -0.86
NEDD9-201ENST00000379433 FOXRED1Q96CU9 486 aaPredicted RBP9.68□□□□□ -0.86
NEDD9-201ENST00000379433 PGLYRP3Q96LB9 341 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 DECR2Q9NUI1 292 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 SLCO1C1Q9NYB5 712 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 LRFN1Q9P244 771 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 M0R296 226 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 RAMP1O60894 148 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 SYPP08247 313 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 OR2B6P58173 313 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 SCN1BQ07699 218 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 RSPO4Q2I0M5 234 aaPredicted RBP9.68□□□□□ -0.86
NEDD9-201ENST00000379433 HSD17B12Q53GQ0 312 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 TEX30Q5JUR7 227 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 ZNF468Q5VIY5 522 aaPredicted RBP9.68□□□□□ -0.86
NEDD9-201ENST00000379433 TMEM65Q6PI78 240 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 OR4M1Q8NGD0 313 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 MEGF10Q96KG7 1140 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 INTS14Q96SY0 518 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 SRRQ9GZT4 340 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 NXF2Q9GZY0 626 aaKnown RBP9.68□□□□□ -0.86
NEDD9-201ENST00000379433 CHODLQ9H9P2 273 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 ELOVL3Q9HB03 270 aa9.68□□□□□ -0.86
NEDD9-201ENST00000379433 A0A075B6Q4 140 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 NSG1A0A0A6YYJ2 146 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 TRAPPC6AO75865 159 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 MSX1P28360 303 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 BIDP55957 195 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 CDK5R1Q15078 307 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 LINC01590Q5TEZ4 76 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 TIGD3Q6B0B8 471 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 TGIF2LXQ8IUE1 241 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 ZNF561Q8N587 486 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 NFAM1Q8NET5 270 aaPredicted RBP9.67□□□□□ -0.86
NEDD9-201ENST00000379433 OR52H1Q8NGJ2 320 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 OR5L2Q8NGL0 311 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 NARS2Q96I59 477 aaKnown RBP9.67□□□□□ -0.86
NEDD9-201ENST00000379433 SNX18Q96RF0 628 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 PTDSS2Q9BVG9 487 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 EIF3KQ9UBQ5 218 aaKnown RBP9.67□□□□□ -0.86
NEDD9-201ENST00000379433 MRPS18BQ9Y676 258 aaKnown RBP9.67□□□□□ -0.86
NEDD9-201ENST00000379433 IGKV1D-43A0A0B4J1Z2 117 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 C19orf67A6NJJ6 358 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 FLRT2O43155 660 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 ZNHIT1O43257 154 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 LANCL1O43813 399 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 STK17BO94768 372 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 GAAP10253 952 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 DNASE1L1P49184 302 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 SELENOVP59797 346 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 RPS4XP62701 263 aaKnown RBP9.67□□□□□ -0.86
NEDD9-201ENST00000379433 RASGEF1BQ0VAM2 473 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 PAMR1Q6UXH9 720 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 HDDC2Q7Z4H3 204 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 DTWD2Q8NBA8 298 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 ZBTB34Q8NCN2 500 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 TMEM234Q8WY98 164 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 TMEM43Q9BTV4 400 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 C19orf25Q9UFG5 118 aaPredicted RBP9.67□□□□□ -0.86
NEDD9-201ENST00000379433 MRM2Q9UI43 246 aaKnown RBP9.67□□□□□ -0.86
NEDD9-201ENST00000379433 FBXL3Q9UKT7 428 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 TMEM238C9JI98 176 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 NXPH2O95156 264 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 SERPINA3P01011 423 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 BGLAPP02818 100 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 ADRB1P08588 477 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 CCL3P10147 92 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 ATF1P18846 271 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 BDKRB2P30411 391 aa9.67□□□□□ -0.86
NEDD9-201ENST00000379433 FGF9P31371 208 aaPredicted RBP9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms