RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 SLAMF6Q96DU3 332 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 B3GNT4Q9C0J1 378 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 GAREM1Q9H706 876 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 ZNF319Q9P2F9 582 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 MGAT4CQ9UBM8 478 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 NPIPB13A6NJU9 1138 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 NPIPB4C9JG80 1138 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 TRAF3IP2O43734 574 aaPredicted RBP11.89□□□□□ -0.51
CCDC3-202ENST00000378839 SIX6O95475 246 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 PGA4P0DJD7 388 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 PGA3P0DJD8 388 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 TDGF1P13385 188 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 NAGAP17050 411 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 ZNF41P51814 821 aaPredicted RBP11.89□□□□□ -0.51
CCDC3-202ENST00000378839 CARD17Q5XLA6 110 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 PAQR4Q8N4S7 273 aaPredicted RBP11.89□□□□□ -0.51
CCDC3-202ENST00000378839 ELP5Q8TE02 316 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 MRGPRX4Q96LA9 322 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 SLC26A1Q9H2B4 701 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 EIF3KQ9UBQ5 218 aaKnown RBP11.89□□□□□ -0.51
CCDC3-202ENST00000378839 HHLA2Q9UM44 414 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 B3GALT5Q9Y2C3 310 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 A0A1B0GVI7 797 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 LOC390937A0A1W2PQ73 354 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 OR2M5A3KFT3 312 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 C5orf63A6NC05 138 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 CCL4P13236 92 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 H2BFSP57053 126 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 OC90Q02509 493 aaPredicted RBP11.89□□□□□ -0.51
CCDC3-202ENST00000378839 B3GNTL1Q67FW5 361 aaPredicted RBP11.89□□□□□ -0.51
CCDC3-202ENST00000378839 ZNF767PQ75MW2 155 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 LUZP2Q86TE4 346 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 GPAT4Q86UL3 456 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 OR5L2Q8NGL0 311 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 IFI44Q8TCB0 444 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 CMBLQ96DG6 245 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 GINS4Q9BRT9 223 aa11.89□□□□□ -0.51
CCDC3-202ENST00000378839 DPCDQ9BVM2 203 aaPredicted RBP11.89□□□□□ -0.51
CCDC3-202ENST00000378839 E9PLN8 166 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 PRAF2O60831 178 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 GTF2F2P13984 249 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 SFTPDP35247 375 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 ZNF81P51508 661 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 FAM198BQ6UWH4 519 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 ZNF813Q6ZN06 617 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 DTX1Q86Y01 620 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 GALNT16Q8N428 558 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 OR52N4Q8NGI2 321 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 SPACA9Q96E40 222 aaPredicted RBP11.88□□□□□ -0.51
CCDC3-202ENST00000378839 OR5B2Q96R09 309 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 CMKLR1Q99788 373 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 CNTD2Q9H8S5 307 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 DIABLOQ9NR28 239 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 RPH3AQ9Y2J0 694 aaPredicted RBP11.88□□□□□ -0.51
CCDC3-202ENST00000378839 LEUTXA8MZ59 168 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 H2BFMP0C1H6 154 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 CXCL2P19875 107 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 ACHEP22303 614 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 PRSS3P35030 304 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 MMP16P51512 607 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 ZNF627Q7L945 461 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 JAGN1Q8N5M9 183 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 FADS6Q8N9I5 356 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 GALNT11Q8NCW6 608 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 OR1J2Q8NGS2 313 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 PROK2Q9HC23 129 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 EMC3Q9P0I2 261 aa11.88□□□□□ -0.51
CCDC3-202ENST00000378839 A0A1W2PPL8 197 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 M0QYG6 137 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 TPPPO94811 219 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 HRGP04196 525 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 GABRA1P14867 456 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 DNASE1L1P49184 302 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 UNC119Q13432 240 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 MFSD13AQ14CX5 517 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 DCAF12L2Q5VW00 463 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 GLT8D1Q68CQ7 371 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 MUC20Q8N307 709 aaPredicted RBP11.87□□□□□ -0.51
CCDC3-202ENST00000378839 RBP7Q96R05 134 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 TINAGL1Q9GZM7 467 aaPredicted RBP11.87□□□□□ -0.51
CCDC3-202ENST00000378839 PBOV1Q9GZY1 135 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 KLK13Q9UKR3 277 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 A0A1B0GTI1 187 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 SLC22A5O76082 557 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 IL5P05113 134 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 SLC2A1P11166 492 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 CPN1P15169 458 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 LAP3P28838 519 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 ANGPT1Q15389 498 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 SLC22A6Q4U2R8 563 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 C1orf100Q5SVJ3 147 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 CHMP1BQ7LBR1 199 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 FTMTQ8N4E7 242 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 SPICQ8N5J4 248 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 SLC17A5Q9NRA2 495 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 B8ZZF3 427 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 G3V3Y1 287 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 KLF7O75840 302 aaPredicted RBP11.87□□□□□ -0.51
CCDC3-202ENST00000378839 OR2A4O95047 310 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 CD2P06729 351 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms