RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 MYBPHLA2RUH7 354 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 CST4P01036 141 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 MT-ND4LP03901 98 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 PRB4P10163 310 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-202ENST00000375405 ORM2P19652 201 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 PTGER3P43115 390 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 CNN1P51911 297 aaKnown RBP4.26□□□□□ -1.73
SCN1A-202ENST00000375405 LOXL3P58215 753 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 KIAA1024LP59773 190 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 SLC35B1P78383 322 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 GTF2BQ00403 316 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 COL9A3Q14050 684 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-202ENST00000375405 GPR18Q14330 331 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF789Q5FWF6 425 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 SPANXN1Q5VSR9 72 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 CPZQ66K79 652 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 BLOC1S3Q6QNY0 202 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 KIRREL2Q6UWL6 708 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 RPS27LQ71UM5 84 aaKnown RBP4.26□□□□□ -1.73
SCN1A-202ENST00000375405 GRINAQ7Z429 371 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 MDS2Q8NDY4 140 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 OR4B1Q8NGF8 309 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 JOSD2Q8TAC2 188 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 C16orf92Q96LL3 132 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 B3GNT5Q9BYG0 378 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 FOXQ1Q9C009 403 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 DNAJB12Q9NXW2 375 aaKnown RBP4.26□□□□□ -1.73
SCN1A-202ENST00000375405 FETUBQ9UGM5 382 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 FLVCR2Q9UPI3 526 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 SNX11Q9Y5W9 270 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 IGKV3D-20A0A0C4DH25 116 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 A0A1W2PNV4 684 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 P2RX6O15547 441 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 SLCO2B1O94956 709 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 CHRM2P08172 466 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 SRFP11831 508 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 ARSAP15289 507 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 GM2AP17900 193 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 ACP1P24666 158 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 STARD6P59095 220 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 PPIAP62937 165 aaKnown RBP4.26□□□□□ -1.73
SCN1A-202ENST00000375405 MVKQ03426 396 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF415Q09FC8 603 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 OTUD1Q5VV17 481 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-202ENST00000375405 NKAIN2Q5VXU1 208 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 NATD1Q8N6N6 113 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 ZBTB44Q8NCP5 570 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 OR5AU1Q8NGC0 362 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 ZG16BQ96DA0 208 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 HSFY1Q96LI6 401 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 HDAC8Q9BY41 377 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 PBOV1Q9GZY1 135 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 ADAMTS10Q9H324 1103 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 MIOXQ9UGB7 285 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 OR5V1Q9UGF6 321 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 NXT1Q9UKK6 140 aaKnown RBP4.26□□□□□ -1.73
SCN1A-202ENST00000375405 GPR52Q9Y2T5 361 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 TMED3Q9Y3Q3 217 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 OVOS2A0A0G2JMS6 1433 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 TRBV7-9A0A0J9YWB2 115 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 A1L4Q6 167 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 FAM189A1O60320 539 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 SNAP29O95721 258 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 F13BP05160 661 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 GUSBP08236 651 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 SLC6A11P48066 632 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 CYB561P49447 251 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 PRPS1P60891 318 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 ELOBQ15370 118 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 ECM1Q16610 540 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 ANKRD22Q5VYY1 191 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 ASCL4Q6XD76 172 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 RETREG3Q86VR2 466 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 WDR5BQ86VZ2 330 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 CHCHD4Q8N4Q1 142 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 DEFB123Q8N688 67 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 C1orf127Q8N9H9 656 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 STXBP6Q8NFX7 210 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 COPS9Q8WXC6 57 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 BADQ92934 168 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 POM121L2Q96KW2 1035 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 GORASP2Q9H8Y8 452 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 EBF2Q9HAK2 575 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 ASB1Q9Y576 335 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 STYXL1Q9Y6J8 313 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 ITSN1Q15811 1721 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 UNC13AQ9UPW8 1703 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF814B7Z6K7 855 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 PTTG1O95997 202 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 PMP2P02689 132 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 KLKB1P03952 638 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 AKAIN1P0CW23 69 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 PCMT1P22061 227 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 ACHEP22303 614 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 PIGAP37287 484 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 INHBCP55103 352 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 TEX30Q5JUR7 227 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 CFAP161Q6P656 301 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 MDP1Q86V88 176 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 SLC35F2Q8IXU6 374 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms