RNA–Protein interactions for RNA: ENST00000375290.6

PTCH1-204, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 10,631 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-204ENST00000375290 C1orf140Q5VVS0 124 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 NUDCD2Q8WVJ2 157 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 SDF2Q99470 211 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 PARP11Q9NR21 331 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 CD96P40200 585 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 MDH2P40926 338 aaKnown RBP9.3□□□□□ -0.92
PTCH1-204ENST00000375290 CMTM4Q8IZR5 234 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 DTX3Q8N9I9 347 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 CMTM2Q8TAZ6 248 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 PHOSPHO2Q8TCD6 241 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 CYBAP13498 195 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 RFC3P40938 356 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 ASCL1P50553 236 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 Q3ZCU0 254 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 PRSS54Q6PEW0 395 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 MED25Q71SY5 747 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 FJX1Q86VR8 437 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 HINT3Q9NQE9 182 aaKnown RBP9.3□□□□□ -0.92
PTCH1-204ENST00000375290 ELF5Q9UKW6 265 aaPredicted RBP9.3□□□□□ -0.92
PTCH1-204ENST00000375290 DUXBA0A1W2PPF3 345 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 H3BNC9 293 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 GPR31O00270 319 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 APOA2P02652 100 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 COX20Q5RI15 118 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 MARCH8Q5T0T0 291 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 TRAT1Q6PIZ9 186 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 ADOQ96SZ5 270 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 SLC23A2Q9UGH3 650 aa9.3□□□□□ -0.92
PTCH1-204ENST00000375290 CCDC187A0A096LP49 1063 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 SLC19A1P41440 591 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 AKR1C1Q04828 323 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 PRSS56P0CW18 603 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 CD22P20273 847 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 GCSHP23434 173 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 FAM3BP58499 235 aaPredicted RBP9.29□□□□□ -0.92
PTCH1-204ENST00000375290 IL22RA1Q8N6P7 574 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 CLEC2LP0C7M8 214 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 OR8G1Q15617 311 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 ARHGDIGQ99819 225 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 TLCD2A6NGC4 264 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 SMAD6O43541 496 aaKnown RBP9.29□□□□□ -0.92
PTCH1-204ENST00000375290 IFI6P09912 130 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 SLURP2P0DP57 97 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 SLC25A4P12235 298 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 CHRNB4P30926 498 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 FAM53BQ14153 422 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 GATSQ8NAP1 163 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 CHST14Q8NCH0 376 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 OR10P1Q8NGE3 313 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 MS4A6EQ96DS6 147 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 GPR137Q96N19 417 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 ZNF768Q9H5H4 540 aaKnown RBP9.29□□□□□ -0.92
PTCH1-204ENST00000375290 CLDND1Q9NY35 253 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 DAPP1Q9UN19 280 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 FRS3O43559 492 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 FOLR3P41439 243 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 UBAC2Q8NBM4 344 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 DNMT3BQ9UBC3 853 aaKnown RBP9.29□□□□□ -0.92
PTCH1-204ENST00000375290 BOLA1Q9Y3E2 137 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 TRAV20A0A0B4J274 112 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 M0R082 166 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 SOCS6O14544 535 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 CT45A10P0DMU9 189 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 VIPR2P41587 438 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 MIDNQ504T8 468 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 SHEQ5VZ18 495 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 CARD17Q5XLA6 110 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 MRPS18AQ9NVS2 196 aaKnown RBP9.29□□□□□ -0.92
PTCH1-204ENST00000375290 ABHD17BQ5VST6 288 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 C9orf62Q8N4C0 152 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 PRRX2Q99811 253 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 CHST2Q9Y4C5 530 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 ZFP92A6NM28 416 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 PTBP3O95758 552 aaKnown RBP9.29□□□□□ -0.92
PTCH1-204ENST00000375290 PNPP00491 289 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 FBXO45P0C2W1 286 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 SRP9P49458 86 aaKnown RBP9.29□□□□□ -0.92
PTCH1-204ENST00000375290 NPY4RP50391 375 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 CLDN15P56746 228 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 GPNMBQ14956 572 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 ZNF787Q6DD87 383 aa9.29□□□□□ -0.92
PTCH1-204ENST00000375290 WDR89Q96FK6 387 aaPredicted RBP9.29□□□□□ -0.92
PTCH1-204ENST00000375290 NSG1A0A0A6YYJ2 146 aa9.28□□□□□ -0.92
PTCH1-204ENST00000375290 MEIS3P1A6NDR6 274 aa9.28□□□□□ -0.92
PTCH1-204ENST00000375290 UBE2G1P62253 170 aa9.28□□□□□ -0.92
PTCH1-204ENST00000375290 LDLRAD1Q5T700 205 aa9.28□□□□□ -0.92
PTCH1-204ENST00000375290 SLC10A1Q14973 349 aa9.28□□□□□ -0.92
PTCH1-204ENST00000375290 FCRLBQ6BAA4 426 aa9.28□□□□□ -0.92
PTCH1-204ENST00000375290 DRAM2Q6UX65 266 aa9.28□□□□□ -0.92
PTCH1-204ENST00000375290 FAM57BQ71RH2 274 aa9.28□□□□□ -0.92
PTCH1-204ENST00000375290 OR4C16Q8NGL9 310 aa9.28□□□□□ -0.92
PTCH1-204ENST00000375290 OR52N5Q8NH56 324 aa9.28□□□□□ -0.92
PTCH1-204ENST00000375290 TMEM40Q8WWA1 233 aa9.28□□□□□ -0.92
PTCH1-204ENST00000375290 UQCC1Q9NVA1 299 aa9.28□□□□□ -0.92
PTCH1-204ENST00000375290 PITPNC1Q9UKF7 332 aa9.28□□□□□ -0.92
PTCH1-204ENST00000375290 PRSS37A4D1T9 235 aa9.28□□□□□ -0.92
PTCH1-204ENST00000375290 GABRA1P14867 456 aa9.28□□□□□ -0.92
PTCH1-204ENST00000375290 JMJD6Q6NYC1 403 aaPredicted RBP9.28□□□□□ -0.92
PTCH1-204ENST00000375290 ZNF573Q86YE8 665 aa9.28□□□□□ -0.92
PTCH1-204ENST00000375290 MAML2Q8IZL2 1156 aaPredicted RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms