RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 PRSS44E7EML9 344 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 MAGEB4O15481 346 aaPredicted RBP12.74□□□□□ -0.37
HMGA1-203ENST00000374116 PRAF2O60831 178 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 EIF4EP06730 217 aaKnown RBP12.74□□□□□ -0.37
HMGA1-203ENST00000374116 TFPIP10646 304 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 CD46P15529 392 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 PGCP20142 388 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 PITPNBP48739 271 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 RPS11P62280 158 aaKnown RBP eCLIP12.74□□□□□ -0.37
HMGA1-203ENST00000374116 RPL18Q07020 188 aaKnown RBP12.74□□□□□ -0.37
HMGA1-203ENST00000374116 PABPC1L2AQ5JQF8 200 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 PYHIN1Q6K0P9 492 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 UNQ9370/PRO34162Q6UXP9 181 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 FTMTQ8N4E7 242 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 OR13C5Q8NGS8 318 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 TRMT10AQ8TBZ6 339 aaKnown RBP12.74□□□□□ -0.37
HMGA1-203ENST00000374116 RPS4Y2Q8TD47 263 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 HAVCR2Q8TDQ0 301 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 PAQR8Q8TEZ7 354 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 TAAR8Q969N4 342 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 C5orf34Q96MH7 638 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 METTL7AQ9H8H3 244 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 SH2D2AQ9NP31 389 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 ABRACLQ9P1F3 81 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 NCKAP5O14513 1909 aa12.73□□□□□ -0.37
HMGA1-203ENST00000374116 TRAV36DV7A0A075B6V5 113 aa12.73□□□□□ -0.37
HMGA1-203ENST00000374116 TRAV17A0A0B4J275 112 aa12.73□□□□□ -0.37
HMGA1-203ENST00000374116 LANCL1O43813 399 aa12.73□□□□□ -0.37
HMGA1-203ENST00000374116 ZNF254O75437 659 aa12.73□□□□□ -0.37
HMGA1-203ENST00000374116 P04436 131 aa12.73□□□□□ -0.37
HMGA1-203ENST00000374116 TACSTD2P09758 323 aa12.73□□□□□ -0.37
HMGA1-203ENST00000374116 GP1BBP13224 206 aa12.73□□□□□ -0.37
HMGA1-203ENST00000374116 ZP1P60852 638 aa12.73□□□□□ -0.37
HMGA1-203ENST00000374116 CBFBQ13951 182 aa12.73□□□□□ -0.37
HMGA1-203ENST00000374116 TOMM34Q15785 309 aaPredicted RBP12.73□□□□□ -0.37
HMGA1-203ENST00000374116 SLC25A35Q3KQZ1 300 aa12.73□□□□□ -0.37
HMGA1-203ENST00000374116 SLC36A2Q495M3 483 aa12.73□□□□□ -0.37
HMGA1-203ENST00000374116 ZNF684Q5T5D7 378 aa12.73□□□□□ -0.37
HMGA1-203ENST00000374116 OR56B4Q8NH76 319 aa12.73□□□□□ -0.37
HMGA1-203ENST00000374116 SCARB1Q8WTV0 552 aa12.73□□□□□ -0.37
HMGA1-203ENST00000374116 RNF138Q8WVD3 245 aa12.73□□□□□ -0.37
HMGA1-203ENST00000374116 PCNPQ8WW12 178 aaKnown RBP12.73□□□□□ -0.37
HMGA1-203ENST00000374116 SGCZQ96LD1 299 aa12.73□□□□□ -0.37
HMGA1-203ENST00000374116 TSPAN10Q9H1Z9 355 aaPredicted RBP12.73□□□□□ -0.37
HMGA1-203ENST00000374116 KLRF1Q9NZS2 232 aa12.73□□□□□ -0.37
HMGA1-203ENST00000374116 PLSCR5A0PG75 271 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 ZNF879B4DU55 563 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 TP53I11O14683 189 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 NME2P1O60361 137 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 RENP00797 406 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 MT-ATP6P00846 226 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 BGLAPP02818 100 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 F13BP05160 661 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 NME2P22392 152 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 PTGDSP41222 190 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 NLRC3Q7RTR2 1065 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 CISD2Q8N5K1 135 aaKnown RBP12.72□□□□□ -0.37
HMGA1-203ENST00000374116 SFXN2Q96NB2 322 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 TSPAN32Q96QS1 320 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 TAAR6Q96RI8 345 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 MNTQ99583 582 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 FANCFQ9NPI8 374 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 NDRG3Q9UGV2 375 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 SVILO95425 2214 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 FREM3P0C091 2139 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 TRAV6A0A075B6T7 132 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 FZD7O75084 574 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 NPIPB7O75200 414 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 WISP1O95388 367 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 NUDT14O95848 222 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 EPXP11678 715 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 PSMB10P40306 273 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 MEOX1P50221 254 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 KLRB1Q12918 225 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 TSC22D1Q15714 1073 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 RNFT1Q5M7Z0 435 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 ZNF511Q8NB15 262 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 OR2T35Q8NGX2 323 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 GPR119Q8TDV5 335 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 PNPLA2Q96AD5 504 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 ADAD1Q96M93 576 aaKnown RBP12.72□□□□□ -0.37
HMGA1-203ENST00000374116 CMTM3Q96MX0 182 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 OR14A2Q96R54 314 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 MS4A7Q9GZW8 240 aaPredicted RBP12.72□□□□□ -0.37
HMGA1-203ENST00000374116 COA4Q9NYJ1 87 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 PURGQ9UJV8 347 aaKnown RBP12.72□□□□□ -0.37
HMGA1-203ENST00000374116 ZNF281Q9Y2X9 895 aa12.72□□□□□ -0.37
HMGA1-203ENST00000374116 FAM166BA8MTA8 275 aa12.71□□□□□ -0.38
HMGA1-203ENST00000374116 FAM171A2A8MVW0 826 aa12.71□□□□□ -0.38
HMGA1-203ENST00000374116 F8W036 122 aa12.71□□□□□ -0.38
HMGA1-203ENST00000374116 PDCD5O14737 125 aa12.71□□□□□ -0.38
HMGA1-203ENST00000374116 ZNHIT1O43257 154 aa12.71□□□□□ -0.38
HMGA1-203ENST00000374116 TMEM127O75204 238 aa12.71□□□□□ -0.38
HMGA1-203ENST00000374116 APOC1P02654 83 aa12.71□□□□□ -0.38
HMGA1-203ENST00000374116 RFPL3SP0C7P2 107 aa12.71□□□□□ -0.38
HMGA1-203ENST00000374116 SFTPCP11686 197 aa12.71□□□□□ -0.38
HMGA1-203ENST00000374116 FOSL1P15407 271 aa12.71□□□□□ -0.38
HMGA1-203ENST00000374116 P2RX1P51575 399 aa12.71□□□□□ -0.38
HMGA1-203ENST00000374116 POLR2HP52434 150 aaKnown RBP12.71□□□□□ -0.38
HMGA1-203ENST00000374116 POLR2GP62487 172 aaKnown RBP eCLIP12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms