RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 A0A1W2PPB8 328 aa12.4□□□□□ -0.42
TRIM4-201ENST00000349062 A0A1W2PRS3 328 aa12.4□□□□□ -0.42
TRIM4-201ENST00000349062 KIR3DP1A8MWS1 328 aa12.4□□□□□ -0.42
TRIM4-201ENST00000349062 TP53I11O14683 189 aa12.4□□□□□ -0.42
TRIM4-201ENST00000349062 UBL3O95164 117 aa12.4□□□□□ -0.42
TRIM4-201ENST00000349062 RRASP10301 218 aa12.4□□□□□ -0.42
TRIM4-201ENST00000349062 GSG1Q2KHT4 349 aa12.4□□□□□ -0.42
TRIM4-201ENST00000349062 KLHL24Q6TFL4 600 aa12.4□□□□□ -0.42
TRIM4-201ENST00000349062 ZNF227Q86WZ6 799 aa12.4□□□□□ -0.42
TRIM4-201ENST00000349062 ESX1Q8N693 406 aa12.4□□□□□ -0.42
TRIM4-201ENST00000349062 WDSUB1Q8N9V3 476 aa12.4□□□□□ -0.42
TRIM4-201ENST00000349062 ACBD4Q8NC06 268 aa12.4□□□□□ -0.42
TRIM4-201ENST00000349062 OR13C9Q8NGT0 318 aa12.4□□□□□ -0.42
TRIM4-201ENST00000349062 AIFM2Q9BRQ8 373 aa12.4□□□□□ -0.42
TRIM4-201ENST00000349062 ZNF436Q9C0F3 470 aaPredicted RBP12.4□□□□□ -0.42
TRIM4-201ENST00000349062 TGIF2Q9GZN2 237 aa12.4□□□□□ -0.42
TRIM4-201ENST00000349062 ARL6Q9H0F7 186 aa12.4□□□□□ -0.42
TRIM4-201ENST00000349062 ABRACLQ9P1F3 81 aa12.4□□□□□ -0.42
TRIM4-201ENST00000349062 FARSAQ9Y285 508 aaKnown RBP12.4□□□□□ -0.42
TRIM4-201ENST00000349062 RPS10-NUDT3A0A1W2PQS6 291 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 NPIPB7O75200 414 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 ABHD16AO95870 558 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 CD2P06729 351 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 ITGA5P08648 1049 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 ANXA7P20073 488 aaKnown RBP12.39□□□□□ -0.43
TRIM4-201ENST00000349062 APOBEC1P41238 236 aaKnown RBP12.39□□□□□ -0.43
TRIM4-201ENST00000349062 PLPPR5Q32ZL2 321 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 EMC4Q5J8M3 183 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 NUBPLQ8TB37 319 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 ZNF519Q8TB69 540 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 POC1BQ8TC44 478 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 HGDQ93099 445 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 RNF166Q96A37 237 aaPredicted RBP12.39□□□□□ -0.43
TRIM4-201ENST00000349062 KCTD12Q96CX2 325 aaKnown RBP12.39□□□□□ -0.43
TRIM4-201ENST00000349062 TMEM138Q9NPI0 162 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 AKAP7Q9P0M2 348 aaPredicted RBP12.39□□□□□ -0.43
TRIM4-201ENST00000349062 CKLFQ9UBR5 152 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 NCOA6Q14686 2063 aaPredicted RBP12.39□□□□□ -0.43
TRIM4-201ENST00000349062 CUL9Q8IWT3 2517 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 LOC107986453A0A1B0GWG9 222 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 LIPT2A6NK58 231 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 RAD52P43351 418 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 SLC36A2Q495M3 483 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 UBE2NLQ5JXB2 153 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 CLLU1Q5K131 121 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 CARFQ8N187 725 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 SLC26A10Q8NG04 563 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 OR11G2Q8NGC1 345 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 FCAMRQ8WWV6 532 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 ELL3Q9HB65 397 aaPredicted RBP12.39□□□□□ -0.43
TRIM4-201ENST00000349062 SCP2D1Q9UJQ7 156 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 LOXL2Q9Y4K0 774 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 TMEM212A6NML5 194 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 TNFSF11O14788 317 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 QDPRP09417 244 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 PATE4P0C8F1 98 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 MAPK3P27361 379 aaPredicted RBP12.39□□□□□ -0.43
TRIM4-201ENST00000349062 GUCA1AP43080 201 aaPredicted RBP12.39□□□□□ -0.43
TRIM4-201ENST00000349062 DAP3P51398 398 aaKnown RBP12.39□□□□□ -0.43
TRIM4-201ENST00000349062 PCOLCEQ15113 449 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 DHRS13Q6UX07 377 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 LINC00696Q6ZRV3 163 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 OR52B4Q8NGK2 314 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 OR2AJ1Q8NGZ0 328 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 OR52N5Q8NH56 324 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 OR14L1PQ8NHC6 308 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 ASB10Q8WXI3 467 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 ADAMTS14Q8WXS8 1223 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 ST8SIA1Q92185 356 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 CMBLQ96DG6 245 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 C20orf85Q9H1P6 137 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 OR52A1Q9UKL2 312 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 FREM1Q5H8C1 2179 aa12.39□□□□□ -0.43
TRIM4-201ENST00000349062 FTCDNL1E5RQL4 147 aa12.38□□□□□ -0.43
TRIM4-201ENST00000349062 SPDEFO95238 335 aa12.38□□□□□ -0.43
TRIM4-201ENST00000349062 DUSP3P51452 185 aaPredicted RBP12.38□□□□□ -0.43
TRIM4-201ENST00000349062 PITPNAQ00169 270 aa12.38□□□□□ -0.43
TRIM4-201ENST00000349062 PCGF3Q3KNV8 242 aa12.38□□□□□ -0.43
TRIM4-201ENST00000349062 NHLRC1Q6VVB1 395 aa12.38□□□□□ -0.43
TRIM4-201ENST00000349062 RAB11FIP2Q7L804 512 aa12.38□□□□□ -0.43
TRIM4-201ENST00000349062 SLC43A2Q8N370 569 aa12.38□□□□□ -0.43
TRIM4-201ENST00000349062 C12orf10Q9HB07 376 aa12.38□□□□□ -0.43
TRIM4-201ENST00000349062 PFDN2Q9UHV9 154 aa12.38□□□□□ -0.43
TRIM4-201ENST00000349062 PADI1Q9ULC6 663 aa12.38□□□□□ -0.43
TRIM4-201ENST00000349062 TOX3O15405 576 aaPredicted RBP12.38□□□□□ -0.43
TRIM4-201ENST00000349062 KRT33AO76009 404 aa12.38□□□□□ -0.43
TRIM4-201ENST00000349062 TXNDC12O95881 172 aa12.38□□□□□ -0.43
TRIM4-201ENST00000349062 CTRB1P17538 263 aa12.38□□□□□ -0.43
TRIM4-201ENST00000349062 CHAF1BQ13112 559 aa12.38□□□□□ -0.43
TRIM4-201ENST00000349062 NKPD1Q17RQ9 610 aa12.38□□□□□ -0.43
TRIM4-201ENST00000349062 C2orf76Q3KRA6 126 aa12.38□□□□□ -0.43
TRIM4-201ENST00000349062 ZNF684Q5T5D7 378 aa12.38□□□□□ -0.43
TRIM4-201ENST00000349062 ZNF385CQ66K41 422 aaPredicted RBP12.38□□□□□ -0.43
TRIM4-201ENST00000349062 CTRB2Q6GPI1 263 aa12.38□□□□□ -0.43
TRIM4-201ENST00000349062 C3orf33Q6P1S2 294 aa12.38□□□□□ -0.43
TRIM4-201ENST00000349062 ABHD12BQ7Z5M8 362 aaPredicted RBP12.38□□□□□ -0.43
TRIM4-201ENST00000349062 NAA40Q86UY6 237 aa12.38□□□□□ -0.43
TRIM4-201ENST00000349062 WDR5BQ86VZ2 330 aa12.38□□□□□ -0.43
TRIM4-201ENST00000349062 DND1Q8IYX4 353 aaKnown RBP12.38□□□□□ -0.43
TRIM4-201ENST00000349062 ZNF283Q8N7M2 679 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms