RNA–Protein interactions for RNA: ENST00000347635.8

NUP50-201, Transcript of nucleoporin 50, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP50, Length 5,233 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-201ENST00000347635 IFNA1P01562 189 aa13.34□□□□□ -0.27
NUP50-201ENST00000347635 HLA-DQB1P01920 261 aa13.34□□□□□ -0.27
NUP50-201ENST00000347635 TUBG1P23258 451 aa13.34□□□□□ -0.27
NUP50-201ENST00000347635 BLVRBP30043 206 aaPredicted RBP13.34□□□□□ -0.27
NUP50-201ENST00000347635 SNRPNP63162 240 aaKnown RBP13.34□□□□□ -0.27
NUP50-201ENST00000347635 H1FNTQ75WM6 255 aaPredicted RBP13.34□□□□□ -0.27
NUP50-201ENST00000347635 MUC20Q8N307 709 aaPredicted RBP13.34□□□□□ -0.27
NUP50-201ENST00000347635 KDM8Q8N371 416 aa13.34□□□□□ -0.27
NUP50-201ENST00000347635 OR1J2Q8NGS2 313 aa13.34□□□□□ -0.27
NUP50-201ENST00000347635 OR2A5Q96R48 311 aa13.34□□□□□ -0.27
NUP50-201ENST00000347635 R4GMQ9 66 aa13.34□□□□□ -0.27
NUP50-201ENST00000347635 PRKNO60260 465 aaPredicted RBP13.34□□□□□ -0.27
NUP50-201ENST00000347635 PSMB6P28072 239 aa13.34□□□□□ -0.27
NUP50-201ENST00000347635 UBE2NP61088 152 aaKnown RBP13.34□□□□□ -0.27
NUP50-201ENST00000347635 DUSP2Q05923 314 aa13.34□□□□□ -0.27
NUP50-201ENST00000347635 RBPJQ06330 500 aa13.34□□□□□ -0.27
NUP50-201ENST00000347635 OR5D18Q8NGL1 313 aa13.34□□□□□ -0.27
NUP50-201ENST00000347635 NICN1Q9BSH3 213 aa13.34□□□□□ -0.27
NUP50-201ENST00000347635 TRAF4Q9BUZ4 470 aaPredicted RBP13.34□□□□□ -0.27
NUP50-201ENST00000347635 SCAND1P57086 179 aa13.34□□□□□ -0.27
NUP50-201ENST00000347635 NXPH1P58417 271 aa13.34□□□□□ -0.27
NUP50-201ENST00000347635 EIF3IQ13347 325 aaKnown RBP13.34□□□□□ -0.27
NUP50-201ENST00000347635 FZD2Q14332 565 aa13.34□□□□□ -0.27
NUP50-201ENST00000347635 ZNF674Q2M3X9 581 aa13.34□□□□□ -0.27
NUP50-201ENST00000347635 SIRT4Q9Y6E7 314 aaPredicted RBP13.34□□□□□ -0.27
NUP50-201ENST00000347635 MAGEB1P43366 347 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 GABREP78334 506 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 OTPQ5XKR4 325 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 LSMEM1Q8N8F7 131 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 TMEM178AQ8NBL3 297 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 TWSG1Q9GZX9 223 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 SLC17A5Q9NRA2 495 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 PCYT1BQ9Y5K3 369 aaPredicted RBP13.33□□□□□ -0.28
NUP50-201ENST00000347635 CASP8AP2Q9UKL3 1982 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 PRAMEF27A3QJZ7 478 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 ZNF425Q6IV72 752 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 C19orf48Q6RUI8 117 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 OTOSQ8NHW6 89 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 PPP1R1CQ8WVI7 109 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 TAF9BQ9HBM6 251 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 KCNS2Q9ULS6 477 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 SF3B6Q9Y3B4 125 aaKnown RBP13.33□□□□□ -0.28
NUP50-201ENST00000347635 ZSWIM8A7E2V4 1837 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 RLFQ13129 1914 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 CNR1P21554 472 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 USF2Q15853 346 aaPredicted RBP13.33□□□□□ -0.28
NUP50-201ENST00000347635 OR10K2Q6IF99 312 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 CLRN3Q8NCR9 226 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 METTL9Q9H1A3 318 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 MCRIP1C9JLW8 97 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 HPXP02790 462 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 APEHP13798 732 aaKnown RBP13.33□□□□□ -0.28
NUP50-201ENST00000347635 ZNF250P15622 560 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 S100PP25815 95 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 IAH1Q2TAA2 248 aaPredicted RBP13.33□□□□□ -0.28
NUP50-201ENST00000347635 EXOSC6Q5RKV6 272 aaKnown RBP13.33□□□□□ -0.28
NUP50-201ENST00000347635 OR52N5Q8NH56 324 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 CMSS1Q9BQ75 279 aaKnown RBP13.33□□□□□ -0.28
NUP50-201ENST00000347635 TXNIPQ9H3M7 391 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 SMCO4Q9NRQ5 59 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 B9D1Q9UPM9 204 aa13.33□□□□□ -0.28
NUP50-201ENST00000347635 HMSDA8MTL9 139 aa13.32□□□□□ -0.28
NUP50-201ENST00000347635 M0R296 226 aa13.32□□□□□ -0.28
NUP50-201ENST00000347635 MAP2K6P52564 334 aa13.32□□□□□ -0.28
NUP50-201ENST00000347635 ANKRD16Q6P6B7 361 aa13.32□□□□□ -0.28
NUP50-201ENST00000347635 ZSCAN4Q8NAM6 433 aaPredicted RBP13.32□□□□□ -0.28
NUP50-201ENST00000347635 C3orf49Q96BT1 292 aa13.32□□□□□ -0.28
NUP50-201ENST00000347635 CTAG2O75638 210 aa13.32□□□□□ -0.28
NUP50-201ENST00000347635 RIN1Q13671 783 aa13.32□□□□□ -0.28
NUP50-201ENST00000347635 MPPED2Q15777 294 aa13.32□□□□□ -0.28
NUP50-201ENST00000347635 SMUG1Q53HV7 270 aa13.32□□□□□ -0.28
NUP50-201ENST00000347635 C11orf87Q6NUJ2 197 aa13.32□□□□□ -0.28
NUP50-201ENST00000347635 PRSS41Q7RTY9 318 aa13.32□□□□□ -0.28
NUP50-201ENST00000347635 GRAMD2AQ8IUY3 354 aa13.32□□□□□ -0.28
NUP50-201ENST00000347635 DTWD2Q8NBA8 298 aa13.32□□□□□ -0.28
NUP50-201ENST00000347635 NUDCD2Q8WVJ2 157 aa13.32□□□□□ -0.28
NUP50-201ENST00000347635 TMED6Q8WW62 240 aa13.32□□□□□ -0.28
NUP50-201ENST00000347635 OR8B4Q96RC9 309 aa13.32□□□□□ -0.28
NUP50-201ENST00000347635 MMP25Q9NPA2 562 aa13.32□□□□□ -0.28
NUP50-201ENST00000347635 DOCK3Q8IZD9 2030 aa13.32□□□□□ -0.28
NUP50-201ENST00000347635 HRH1P35367 487 aa13.32□□□□□ -0.28
NUP50-201ENST00000347635 SLAMF9Q96A28 289 aa13.32□□□□□ -0.28
NUP50-201ENST00000347635 KTI12Q96EK9 354 aaPredicted RBP13.32□□□□□ -0.28
NUP50-201ENST00000347635 LINC00052Q96N35 136 aa13.32□□□□□ -0.28
NUP50-201ENST00000347635 SHOXO15266 292 aa13.32□□□□□ -0.28
NUP50-201ENST00000347635 TGFBR3Q03167 851 aa13.32□□□□□ -0.28
NUP50-201ENST00000347635 GNB3P16520 340 aa13.31□□□□□ -0.28
NUP50-201ENST00000347635 ECI1P42126 302 aa13.31□□□□□ -0.28
NUP50-201ENST00000347635 CX3CR1P49238 355 aa13.31□□□□□ -0.28
NUP50-201ENST00000347635 FUT5Q11128 374 aa13.31□□□□□ -0.28
NUP50-201ENST00000347635 WDR38Q5JTN6 314 aa13.31□□□□□ -0.28
NUP50-201ENST00000347635 SFRP5Q5T4F7 317 aa13.31□□□□□ -0.28
NUP50-201ENST00000347635 SLC38A6Q8IZM9 456 aa13.31□□□□□ -0.28
NUP50-201ENST00000347635 KCNRGQ8N5I3 272 aa13.31□□□□□ -0.28
NUP50-201ENST00000347635 SLAMF6Q96DU3 332 aa13.31□□□□□ -0.28
NUP50-201ENST00000347635 TINAGL1Q9GZM7 467 aaPredicted RBP13.31□□□□□ -0.28
NUP50-201ENST00000347635 GHITMQ9H3K2 345 aa13.31□□□□□ -0.28
NUP50-201ENST00000347635 BANF2Q9H503 90 aa13.31□□□□□ -0.28
NUP50-201ENST00000347635 FBXO4Q9UKT5 387 aa13.31□□□□□ -0.28
NUP50-201ENST00000347635 MRPS2Q9Y399 296 aaKnown RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms