RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 ESPNLQ6ZVH7 1005 aa9.38□□□□□ -0.91
CCDC88A-202ENST00000336838 OR2G3Q8NGZ4 309 aa9.38□□□□□ -0.91
CCDC88A-202ENST00000336838 hCG_1809904A0A1W2PP81 198 aa9.38□□□□□ -0.91
CCDC88A-202ENST00000336838 A0A1W2PPE2 198 aa9.38□□□□□ -0.91
CCDC88A-202ENST00000336838 A0A1W2PR64 198 aa9.38□□□□□ -0.91
CCDC88A-202ENST00000336838 A0A1W2PRV1 198 aa9.38□□□□□ -0.91
CCDC88A-202ENST00000336838 CYC1P08574 325 aa9.38□□□□□ -0.91
CCDC88A-202ENST00000336838 RBP2P50120 134 aa9.38□□□□□ -0.91
CCDC88A-202ENST00000336838 PET117Q6UWS5 81 aa9.38□□□□□ -0.91
CCDC88A-202ENST00000336838 FBXL6Q8N531 539 aa9.38□□□□□ -0.91
CCDC88A-202ENST00000336838 BCORP1Q8N888 145 aa9.38□□□□□ -0.91
CCDC88A-202ENST00000336838 OR2G2Q8NGZ5 317 aa9.38□□□□□ -0.91
CCDC88A-202ENST00000336838 OR4A16Q8NH70 328 aa9.38□□□□□ -0.91
CCDC88A-202ENST00000336838 RASD2Q96D21 266 aa9.38□□□□□ -0.91
CCDC88A-202ENST00000336838 PCED1AQ9H1Q7 454 aa9.38□□□□□ -0.91
CCDC88A-202ENST00000336838 ASPDHA6ND91 283 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 A6NIN4 97 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 RACK1P63244 317 aaKnown RBP9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 NLRC3Q7RTR2 1065 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 TAS1R1Q7RTX1 841 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 BRWD1Q9NSI6 2320 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 CD79AP11912 226 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 NKX2-1P43699 371 aaPredicted RBP9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 IKZF1Q13422 519 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 ZNF611Q8N823 705 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 ADAM19Q9H013 955 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 NKX2-4Q9H2Z4 354 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 A0A0B4J2E0 115 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 A0A1B0GX12 115 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 PIP5K1CO60331 668 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 C1QAP02745 245 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 CLDN12P56749 244 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 FZD2Q14332 565 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 MEX3DQ86XN8 651 aaKnown RBP9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 HMGCLL1Q8TB92 370 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 SLC23A2Q9UGH3 650 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 TCN2P20062 427 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 IRS1P35568 1242 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 ARR3P36575 388 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 PCK2Q16822 640 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 OGFOD3Q6PK18 319 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 KDF1Q8NAX2 398 aaPredicted RBP9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 OR4Q3Q8NH05 313 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 PINX1Q96BK5 328 aaKnown RBP9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 DLL4Q9NR61 685 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 VSX1Q9NZR4 365 aaPredicted RBP9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 SLC17A4Q9Y2C5 497 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 NPY4RP50391 375 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 OR11L1Q8NGX0 322 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 C10orf35Q96D05 121 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 BARHL1Q9BZE3 327 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 SMDT1Q9H4I9 107 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 FAM74A1Q5RGS3 127 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 UBE2FQ969M7 185 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 ANKRD61A6NGH8 418 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 PRAMEF4O60810 478 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 PMP2P02689 132 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 PAX6P26367 422 aa9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 RPL12P30050 165 aaKnown RBP9.37□□□□□ -0.91
CCDC88A-202ENST00000336838 A0A1W2PPH5 198 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 FIGNL2A6NMB9 653 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 PLRG1O43660 514 aaKnown RBP9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 PTGER4P35408 488 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 ADPRHP54922 357 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 TMEM99Q8N816 258 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 LRIT1Q9P2V4 623 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 PTPRDP23468 1912 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 CD1AP06126 327 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 ENPP1P22413 925 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 ZNF345Q14585 488 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 PLA1AQ53H76 456 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 PRSS42Q7Z5A4 293 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 BBS1Q8NFJ9 593 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 SMIM3Q9BZL3 60 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 TNFRSF12AQ9NP84 129 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 A4GNTQ9UNA3 340 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 WNT11O96014 354 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 FPR2P25090 351 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 PCBP4P57723 403 aaKnown RBP9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 CST9LP1Q5W188 147 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 C11orf87Q6NUJ2 197 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 Q8IYB0 196 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 IL22RA1Q8N6P7 574 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 OR52N5Q8NH56 324 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 NPRL2Q8WTW4 380 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 FGGYQ96C11 551 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 PURGQ9UJV8 347 aaKnown RBP9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 M0R082 166 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 LAMTOR5O43504 91 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 CAPZBP47756 277 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 OR51A4Q8NGJ6 313 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 ST7LQ8TDW4 575 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 GCM1Q9NP62 436 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 MTFP1Q9UDX5 166 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 BET1O15155 118 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 SIX6O95475 246 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 SDHBP21912 280 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 SRP9P49458 86 aaKnown RBP9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 LYSMD4Q5XG99 296 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 NKAIN4Q8IVV8 208 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms