RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 ERHP84090 104 aaKnown RBP13.1□□□□□ -0.31
COL7A1-201ENST00000328333 TOMM34Q15785 309 aaPredicted RBP13.1□□□□□ -0.31
COL7A1-201ENST00000328333 GPR62Q9BZJ7 368 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 DUSP21Q9H596 190 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 RHOFQ9HBH0 211 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 DEGS1O15121 323 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 EDN1P05305 212 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 NOVA1P51513 510 aaKnown RBP13.1□□□□□ -0.31
COL7A1-201ENST00000328333 THNSL2Q86YJ6 484 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 SAT2Q96F10 170 aaPredicted RBP13.1□□□□□ -0.31
COL7A1-201ENST00000328333 GPR78Q96P69 363 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 FLVCR2Q9UPI3 526 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 M0QYG6 137 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 RAB38P57729 211 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 CSNK1G2P78368 415 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 LYRM4Q9HD34 91 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 RALYQ9UKM9 306 aaKnown RBP13.1□□□□□ -0.31
COL7A1-201ENST00000328333 A0A087X0M5 115 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 A0A1B0GX30 115 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 AP4M1O00189 453 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 SEMA4FO95754 770 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 CD99P14209 185 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 RBPJQ06330 500 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 EXT1Q16394 746 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 TBC1D28Q2M2D7 210 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 LEXMQ3ZCV2 418 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 VWA2Q5GFL6 755 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 TMEM123Q8N131 208 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 OR5AR1Q8NGP9 310 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 OLIG1Q8TAK6 271 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 BOD1Q96IK1 185 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 C3orf30Q96M34 536 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 CA14Q9ULX7 337 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 GALR2O43603 387 aaPredicted RBP13.1□□□□□ -0.31
COL7A1-201ENST00000328333 IL17FQ96PD4 163 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 MANBALQ9NQG1 85 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 TIMM8AO60220 97 aaPredicted RBP13.09□□□□□ -0.31
COL7A1-201ENST00000328333 HTR6P50406 440 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 ARG2P78540 354 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 DMWDQ09019 674 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 GGNBP1Q5YKI7 109 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 TMPRSS11FQ6ZWK6 438 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 TSEN54Q7Z6J9 526 aaKnown RBP13.09□□□□□ -0.31
COL7A1-201ENST00000328333 EGLN2Q96KS0 407 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 C2orf50Q96LR7 162 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 SUCNR1Q9BXA5 334 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 CICQ96RK0 1608 aaPredicted RBP13.09□□□□□ -0.31
COL7A1-201ENST00000328333 CAMTA1Q9Y6Y1 1673 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 CST4P01036 141 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 GDF7Q7Z4P5 450 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 SYT9Q86SS6 491 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 PPP1R1CQ8WVI7 109 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 ANAPC16Q96DE5 110 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 MMACHCQ9Y4U1 282 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 SHC1P29353 583 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 ADPRHP54922 357 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 SEMA3BQ13214 749 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 ACOT8O14734 319 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 OR4E1P0C645 316 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 FAM74A3Q4VXF1 159 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 PLPP7Q8NBV4 271 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 ZNF480Q8WV37 535 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 LIPHQ8WWY8 451 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 RAB24Q969Q5 203 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 MS4A10Q96PG2 267 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 OR5M11Q96RB7 305 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 CD46P15529 392 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 ALOX5APP20292 161 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 RRADP55042 308 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 TAZQ16635 292 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 BTNL3Q6UXE8 466 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 FTSJ1Q9UET6 329 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 POMT2Q9UKY4 750 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 FAM227AF5H4B4 570 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 TOX3O15405 576 aaPredicted RBP13.09□□□□□ -0.31
COL7A1-201ENST00000328333 OR7C2O60412 319 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 ATXN1LP0C7T5 689 aaKnown RBP13.09□□□□□ -0.31
COL7A1-201ENST00000328333 PRDX1Q06830 199 aaKnown RBP13.09□□□□□ -0.31
COL7A1-201ENST00000328333 GABRG1Q8N1C3 465 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 PNPLA1Q8N8W4 532 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 TNRC6CQ9HCJ0 1690 aaKnown RBP13.09□□□□□ -0.31
COL7A1-201ENST00000328333 MPGP29372 298 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 AKR1C3P42330 323 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 PELI3Q8N2H9 469 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 OR2AK2Q8NG84 335 aa13.09□□□□□ -0.31
COL7A1-201ENST00000328333 CRYBG1Q9Y4K1 1723 aa13.08□□□□□ -0.31
COL7A1-201ENST00000328333 RPA2P15927 270 aa13.08□□□□□ -0.31
COL7A1-201ENST00000328333 OTX2P32243 289 aa13.08□□□□□ -0.31
COL7A1-201ENST00000328333 VASPP50552 380 aaPredicted RBP13.08□□□□□ -0.31
COL7A1-201ENST00000328333 OR4D10Q8NGI6 311 aa13.08□□□□□ -0.31
COL7A1-201ENST00000328333 A0A0B4J203 849 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 PGA3P0DJD8 388 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 UBE3DQ7Z6J8 389 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 S1PR3Q99500 378 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 SHARPINQ9H0F6 387 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 LRRC3CA6NJW4 275 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 RNASEK-C17orf49H0YIS7 233 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 GALR1P47211 349 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 GDPD3Q7L5L3 318 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 MBOAT4Q96T53 435 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms