RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 ADMP35318 185 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 ZNF133P52736 654 aaPredicted RBP7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 NFATC3Q12968 1075 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 TSPAN31Q12999 210 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 KCNC3Q14003 757 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 AMZ2Q86W34 360 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 RPEQ96AT9 228 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 BIRC7Q96CA5 298 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 SSBP3Q9BWW4 388 aaPredicted RBP7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 DEFB129Q9H1M3 183 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 NXT2Q9NPJ8 142 aaKnown RBP7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 TRBV7-9A0A0J9YWB2 115 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 CCL22O00626 93 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 SPINT2O43291 252 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 OR5AC1P0C628 307 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 IL3RAP26951 378 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 CYBRD1Q53TN4 286 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 TMEM139Q8IV31 216 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 CLEC1AQ8NC01 280 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 SNX22Q96L94 193 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 C20orf85Q9H1P6 137 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 MN1Q10571 1320 aaPredicted RBP7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 ZCWPW2A0A1B0GU75 182 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 MYADML2A6NDP7 307 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 FPR1P21462 350 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 CD38P28907 300 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 ACVRL1P37023 503 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 GNG4P50150 75 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 VASPP50552 380 aaPredicted RBP7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 NOVA1P51513 510 aaKnown RBP7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 SPP2Q13103 211 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 ADPRMQ3LIE5 342 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 OCIAD2Q56VL3 154 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 NXNL2Q5VZ03 156 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 MKXQ8IYA7 352 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 PRSS35Q8N3Z0 413 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 ZDHHC22Q8N966 263 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 MAP6Q96JE9 813 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 DNAJC4Q9NNZ3 241 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 INIPQ9NRY2 104 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 TNFRSF19Q9NS68 423 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 TMEM14AQ9Y6G1 99 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 RCCD1A6NED2 376 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 DUS4LO95620 317 aaKnown RBP7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 ATP1B1P05026 303 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 SBK3P0C264 359 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 MIPP30301 263 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 OPRK1P41145 380 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 GPLD1P80108 840 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 CEACAM21Q3KPI0 293 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 SLC16A12Q6ZSM3 486 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 NDUFAF7Q7L592 441 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 NIPA1Q7RTP0 329 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 WFDC11Q8NEX6 87 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 IL17REQ8NFR9 667 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 OR10W1Q8NGF6 305 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 OR13J1Q8NGT2 312 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 CDCP1Q9H5V8 836 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 NGBQ9NPG2 151 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 TLR9Q9NR96 1032 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 FEZF1A0PJY2 475 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 ABLIM3O94929 683 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 PPP1R3DO95685 299 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 COX5AP20674 150 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 STK19P49842 368 aaPredicted RBP7□□□□□ -1.29
LIMCH1-201ENST00000313860 NPY4RP50391 375 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 MPEG1Q2M385 716 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 FUBP3Q96I24 572 aaKnown RBP eCLIP7□□□□□ -1.29
LIMCH1-201ENST00000313860 GUCD1Q96NT3 240 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 ALKBH7Q9BT30 221 aaPredicted RBP7□□□□□ -1.29
LIMCH1-201ENST00000313860 MUTYHQ9UIF7 546 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 UBIAD1Q9Y5Z9 338 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 TRAV36DV7A0A075B6V5 113 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 MFNGO00587 321 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 ITGB1BP1O14713 200 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 MBTPS2O43462 519 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 GDF10P55107 478 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 PAFAH1B2P68402 229 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 ZNF385CQ66K41 422 aaPredicted RBP7□□□□□ -1.29
LIMCH1-201ENST00000313860 ZNF776Q68DI1 518 aaPredicted RBP7□□□□□ -1.29
LIMCH1-201ENST00000313860 SPTSSBQ8NFR3 76 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 VSTM2AQ8TAG5 236 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 A4GNTQ9UNA3 340 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 ZCCHC11Q5TAX3 1644 aaKnown RBP7□□□□□ -1.29
LIMCH1-201ENST00000313860 GABRDO14764 452 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 PPM1DO15297 605 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 CNTN5O94779 1100 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 NKX2-2O95096 273 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 C1orf105O95561 183 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 PGA4P0DJD7 388 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 PGA3P0DJD8 388 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 PGA5P0DJD9 388 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 HIST1H1DP16402 221 aaKnown RBP7□□□□□ -1.29
LIMCH1-201ENST00000313860 RAB38P57729 211 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 INCA1Q0VD86 236 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 SHBQ15464 509 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 DPY19L2P2Q6ZN68 376 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 NTNG2Q96CW9 530 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 FAM210BQ96KR6 192 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 TEPSINQ96N21 525 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms