RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 CXCL1P09341 107 aa13.24□□□□□ -0.29
PTPRA-201ENST00000216877 ZNF705DP0CH99 300 aaPredicted RBP13.24□□□□□ -0.29
PTPRA-201ENST00000216877 ZNF705BP0CI00 300 aaPredicted RBP13.24□□□□□ -0.29
PTPRA-201ENST00000216877 CYBAP13498 195 aa13.24□□□□□ -0.29
PTPRA-201ENST00000216877 KLK2P20151 261 aa13.24□□□□□ -0.29
PTPRA-201ENST00000216877 HRH1P35367 487 aa13.24□□□□□ -0.29
PTPRA-201ENST00000216877 ADPRHP54922 357 aa13.24□□□□□ -0.29
PTPRA-201ENST00000216877 NKAIN1Q4KMZ8 207 aa13.24□□□□□ -0.29
PTPRA-201ENST00000216877 DRAM2Q6UX65 266 aa13.24□□□□□ -0.29
PTPRA-201ENST00000216877 CD300LGQ6UXG3 332 aa13.24□□□□□ -0.29
PTPRA-201ENST00000216877 HIST3H2BBQ8N257 126 aa13.24□□□□□ -0.29
PTPRA-201ENST00000216877 FAM71E2Q8N5Q1 922 aa13.24□□□□□ -0.29
PTPRA-201ENST00000216877 ZNRF4Q8WWF5 429 aa13.24□□□□□ -0.29
PTPRA-201ENST00000216877 MRI1Q9BV20 369 aa13.24□□□□□ -0.29
PTPRA-201ENST00000216877 RNF126Q9BV68 326 aa13.24□□□□□ -0.29
PTPRA-201ENST00000216877 PBDC1Q9BVG4 233 aa13.24□□□□□ -0.29
PTPRA-201ENST00000216877 C6orf106Q9H6K1 298 aaPredicted RBP13.24□□□□□ -0.29
PTPRA-201ENST00000216877 LAMP5Q9UJQ1 280 aa13.24□□□□□ -0.29
PTPRA-201ENST00000216877 H7C4K7 107 aa13.24□□□□□ -0.29
PTPRA-201ENST00000216877 LDLRAD4O15165 306 aa13.24□□□□□ -0.29
PTPRA-201ENST00000216877 PTBP3O95758 552 aaKnown RBP13.24□□□□□ -0.29
PTPRA-201ENST00000216877 PGA4P0DJD7 388 aa13.24□□□□□ -0.29
PTPRA-201ENST00000216877 PGA5P0DJD9 388 aa13.24□□□□□ -0.29
PTPRA-201ENST00000216877 ALDH3B1P43353 468 aa13.24□□□□□ -0.29
PTPRA-201ENST00000216877 HEPN1Q6WQI6 88 aa13.24□□□□□ -0.29
PTPRA-201ENST00000216877 TMEM208Q9BTX3 173 aa13.24□□□□□ -0.29
PTPRA-201ENST00000216877 RAB22AQ9UL26 194 aa13.24□□□□□ -0.29
PTPRA-201ENST00000216877 ZNF780BQ9Y6R6 833 aa13.24□□□□□ -0.29
PTPRA-201ENST00000216877 SCN2AQ99250 2005 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 DOCK4Q8N1I0 1966 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 A0A1W2PPC1 479 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 MBLAC1A4D2B0 266 aaPredicted RBP13.23□□□□□ -0.29
PTPRA-201ENST00000216877 KLF8O95600 359 aaPredicted RBP13.23□□□□□ -0.29
PTPRA-201ENST00000216877 AK1P00568 194 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 BSGP35613 385 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 TRA2AQ13595 282 aaKnown RBP eCLIP13.23□□□□□ -0.29
PTPRA-201ENST00000216877 MRPL2Q5T653 305 aaKnown RBP13.23□□□□□ -0.29
PTPRA-201ENST00000216877 PLPP4Q5VZY2 271 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 LEG1Q6P5S2 330 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 ZNF574Q6ZN55 896 aaPredicted RBP13.23□□□□□ -0.29
PTPRA-201ENST00000216877 SYS1Q8N2H4 156 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 OR56A1Q8NGH5 318 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 OR5AR1Q8NGP9 310 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 EDAQ92838 391 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 SLC41A2Q96JW4 573 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 TUBA4BQ9H853 241 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 RCL1Q9Y2P8 373 aaKnown RBP13.23□□□□□ -0.29
PTPRA-201ENST00000216877 DOCK6Q96HP0 2047 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 HSPA12AO43301 675 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 GMFGO60234 142 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 SLC2A1P11166 492 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 ZBTB25P24278 435 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 CTGFP29279 349 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 FCGR2CP31995 323 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 ASCL1P50553 236 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 ZNF417Q8TAU3 575 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 POC1BQ8TC44 478 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 WFIKKN1Q96NZ8 548 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 MOGAT1Q96PD6 335 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 SNHG12Q9BXW3 62 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 LMAN2LQ9H0V9 348 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 SLC35B3Q9H1N7 401 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 CLEC4EQ9ULY5 219 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 HEATR5BQ9P2D3 2071 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 A8MWP6 167 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 PGA3P0DJD8 388 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 NAAAQ02083 359 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 DUSP2Q05923 314 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 GPR137CQ8N3F9 429 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 Q8WTZ3 238 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 SMIM8Q96KF7 97 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 ARHGDIGQ99819 225 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 MESP1Q9BRJ9 268 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 OR11A1Q9GZK7 315 aa13.23□□□□□ -0.29
PTPRA-201ENST00000216877 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 PEX12O00623 359 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 TNFSF12O43508 249 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 CLDN6P56747 220 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 SLC35A4Q96G79 324 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 RARRES2Q99969 163 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 COLEC10Q9Y6Z7 277 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 LOC100289279A0A1B0GTE1 492 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 C4orf47A7E2U8 309 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 F8VVB4 439 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 F8VWA3 439 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 HOXA2O43364 376 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 SLC11A1P49279 550 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 MAJINQ3KP22 176 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 AWAT2Q6E213 333 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 CHST9Q7L1S5 443 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 MAML2Q8IZL2 1156 aaPredicted RBP13.22□□□□□ -0.29
PTPRA-201ENST00000216877 FAM185AQ8N0U4 392 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 FRZBQ92765 325 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 RAB24Q969Q5 203 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 PPP1R14AQ96A00 147 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 ZNF558Q96NG5 402 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 LUZP4Q9P127 313 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 FBXL17Q9UF56 701 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 RAB1AP62820 205 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 OR5I1Q13606 314 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms