RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 FMO2Q99518 471 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 TIMM17AQ99595 171 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 COPS8Q99627 209 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 RHOXF2Q9BQY4 288 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 SHANK2-AS3Q9BTD1 123 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 TMEM43Q9BTV4 400 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 CHCHD7Q9BUK0 85 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 TPPP3Q9BW30 176 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 ANKRD60Q9BZ19 345 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 FRMD8P1Q9BZ68 369 aaPredicted RBP0.09□□□□□ -2.4
VPS35-212ENST00000640313 MFFQ9GZY8 342 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 RACGAP1Q9H0H5 632 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 C1orf198Q9H425 327 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 GORASP2Q9H8Y8 452 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 NEK6Q9HC98 313 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 NT5MQ9NPB1 228 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 FARSBQ9NSD9 589 aaKnown RBP0.09□□□□□ -2.4
VPS35-212ENST00000640313 DDX19AQ9NUU7 478 aaKnown RBP0.09□□□□□ -2.4
VPS35-212ENST00000640313 HPF1Q9NWY4 346 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 BFARQ9NZS9 450 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 SUN2Q9UH99 717 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 SLC7A8Q9UHI5 535 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 HOOK1Q9UJC3 728 aaKnown RBP0.09□□□□□ -2.4
VPS35-212ENST00000640313 LSM7Q9UK45 103 aaKnown RBP0.09□□□□□ -2.4
VPS35-212ENST00000640313 PTBP2Q9UKA9 531 aaKnown RBP0.09□□□□□ -2.4
VPS35-212ENST00000640313 CDH9Q9ULB4 789 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 TMED5Q9Y3A6 229 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 CBY1Q9Y3M2 126 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 NPTNQ9Y639 398 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 IKBKGQ9Y6K9 419 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 COMMD3-BMI1R4GMX3 469 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 FBN2P35556 2912 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 ZSWIM8A7E2V4 1837 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 CAMTA1Q9Y6Y1 1673 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 BRD4O60885 1362 aaPredicted RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 PALLDQ8WX93 1383 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 RP1L1Q8IWN7 2480 aaPredicted RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 TNKS1BP1Q9C0C2 1729 aaKnown RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 IGHV3-49A0A0A0MS15 119 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 CCL15-CCL14A0A0B4J2E2 113 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 A0A0J9YXV3 536 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 GLYATL1P3A0A0U1RQE8 302 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 A0A1B0GUH1 482 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 A0A1B0GVL5 298 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 BTBD17A6NE02 478 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 SDHAF1A6NFY7 115 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 OR5H1A6NKK0 313 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 OR52A4PA6NMU1 304 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 LRRIQ3A6PVS8 624 aaPredicted RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 CLDN34H7C241 214 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 H7C417 338 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 J3QRE1 110 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 CDC7O00311 574 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 PLPP1O14494 284 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 CXCL11O14625 94 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 SCAMP2O15127 329 aaKnown RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 NVLO15381 856 aaKnown RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 POLR2DO15514 142 aaKnown RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 PSTPIP1O43586 416 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 OR7C2O60412 319 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 PEX11AO75192 247 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 SERPINB7O75635 380 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 CNMDO75829 334 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 SCGNO76038 276 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 SLC22A5O76082 557 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 KLHL2O95198 593 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 CST1P01037 141 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 IGLV6-57P01721 117 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 FGGP02679 453 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 HSMCR30P0CW71 290 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 CT45A6P0DMU7 189 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 CT45A5P0DMU8 189 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 CT45A7P0DMV0 189 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 DBTP11182 482 aaKnown RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 ZNF250P15622 560 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 CTRB1P17538 263 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 IL1RNP18510 177 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 NELFEP18615 380 aaKnown RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 RAB3AP20336 220 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 RAB3BP20337 219 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 DCKP27707 260 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 HNRNPH3P31942 346 aaKnown RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 OTX1P32242 354 aaPredicted RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 CD70P32970 193 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 RDXP35241 583 aaKnown RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 POLR2IP36954 125 aaKnown RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 HSD17B2P37059 387 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 TGFBR2P37173 567 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 TPMTP51580 245 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 CCNHP51946 323 aaPredicted RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 ARFIP1P53367 373 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 PRMT2P55345 433 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 RPL23P62829 140 aaKnown RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 KCNJ2P63252 427 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 IFT88Q13099 833 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 CHIT1Q13231 466 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 GPM6BQ13491 265 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 RCAN2Q14206 197 aa0.08□□□□□ -2.4
VPS35-212ENST00000640313 PIGHQ14442 188 aaPredicted RBP0.08□□□□□ -2.4
VPS35-212ENST00000640313 IHHQ14623 411 aa0.08□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms