RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 LAMP1P11279 417 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 GNLYP22749 145 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 TAGLN2P37802 199 aaKnown RBP4.55□□□□□ -1.68
SCN1A-218ENST00000640036 OR4D1Q15615 310 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 CDONQ4KMG0 1287 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 XKR7Q5GH72 579 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 UBE2NLQ5JXB2 153 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 RBMXL3Q8N7X1 1067 aaKnown RBP4.55□□□□□ -1.68
SCN1A-218ENST00000640036 SSX3Q99909 188 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 OCSTAMPQ9BR26 566 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 LAT2Q9GZY6 243 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 ISYNA1Q9NPH2 558 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 SLC35D1Q9NTN3 355 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 RHCGQ9UBD6 479 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 EXOSC1Q9Y3B2 195 aaKnown RBP4.55□□□□□ -1.68
SCN1A-218ENST00000640036 MRPS18BQ9Y676 258 aaKnown RBP4.55□□□□□ -1.68
SCN1A-218ENST00000640036 BRCA1P38398 1863 aaKnown RBP4.55□□□□□ -1.68
SCN1A-218ENST00000640036 GAPDHSO14556 408 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-218ENST00000640036 MPIG6BO95866 241 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 GMPRP36959 345 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 LGALS7P47929 136 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 MXD1Q05195 221 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 PLA1AQ53H76 456 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 KDM4DQ6B0I6 523 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 SP5Q6BEB4 398 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-218ENST00000640036 OR52W1Q6IF63 320 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 CCDC144NLQ6NUI1 221 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 CENPVQ7Z7K6 275 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-218ENST00000640036 C1orf174Q8IYL3 243 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 OR6V1Q8N148 313 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 SLC25A45Q8N413 288 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 KRTCAP2Q8N6L1 136 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 C16orf52Q8NHV5 167 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 DPH3Q96FX2 82 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 GRAMD2BQ96HH9 432 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 BTNL2Q9UIR0 455 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 TUBD1Q9UJT1 453 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 IGHV3-15A0A0B4J1V0 119 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 OR2M5A3KFT3 312 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 TVP23AA6NH52 213 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 SMLR1H3BR10 107 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 MSTNO14793 375 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 ZG16O60844 167 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 HLA-DPB1P04440 258 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 STAG3L3P0CL85 134 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 CD8BP10966 210 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 TACR1P25103 407 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 ABCD3P28288 659 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 GIPRP48546 466 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 PEA15Q15121 130 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 CTSL3PQ5NE16 218 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 FOXRED2Q8IWF2 684 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 ZC3H3Q8IXZ2 948 aaKnown RBP4.55□□□□□ -1.68
SCN1A-218ENST00000640036 PLPP5Q8NEB5 264 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 OR13D1Q8NGV5 346 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 NUBPLQ8TB37 319 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 MIB2Q96AX9 1013 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 PLPPR2Q96GM1 343 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 SMPD3Q9NY59 655 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-218ENST00000640036 PTTG3PQ9NZH4 202 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 C1QTNF9BB2RNN3 333 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 F13BP05160 661 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 SCG5P05408 212 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 C1QTNF9P0C862 333 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 ITGAMP11215 1152 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 CEACAM16Q2WEN9 425 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 MDGA2Q7Z553 956 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 B3GNT8Q7Z7M8 397 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 CA13Q8N1Q1 262 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 LMO3Q8TAP4 145 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 MED30Q96HR3 178 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 NOL4LQ96MY1 436 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-218ENST00000640036 SNX18Q96RF0 628 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 CXorf21Q9HAI6 301 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 ASF1BQ9NVP2 202 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 LRRK2Q5S007 2527 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 PROB1E7EW31 1015 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 HSPB6O14558 160 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 NCK1P16333 377 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 SRD5A1P18405 259 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 KDELR2P33947 212 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 ADAM5Q6NVV9 412 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 ZNF793Q6ZN11 406 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 TIFABQ6ZNK6 161 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 RNF113BQ8IZP6 322 aaKnown RBP4.55□□□□□ -1.68
SCN1A-218ENST00000640036 SPARTQ8N0X7 666 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 BEST4Q8NFU0 473 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 OR6F1Q8NGZ6 308 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 APOBEC3DQ96AK3 386 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-218ENST00000640036 MS4A6EQ96DS6 147 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 ZNF778Q96MU6 729 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 FIZ1Q96SL8 496 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 ERVK13-1Q9NX77 482 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 CDC42EP3Q9UKI2 254 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 ZSCAN5BA6NJL1 495 aa4.54□□□□□ -1.68
SCN1A-218ENST00000640036 RAB3DO95716 219 aa4.54□□□□□ -1.68
SCN1A-218ENST00000640036 MT-ND1P03886 318 aa4.54□□□□□ -1.68
SCN1A-218ENST00000640036 SHBGP04278 402 aa4.54□□□□□ -1.68
SCN1A-218ENST00000640036 IGHV4-34P06331 123 aa4.54□□□□□ -1.68
SCN1A-218ENST00000640036 TMEM11P17152 192 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms