RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ATP5C1P36542 298 aaKnown RBP1.65□□□□□ -2.15
CD44-239ENST00000639002 CRYBB2P43320 205 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 CASP4P49662 377 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 CCNG1P51959 295 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 ATP1B3P54709 279 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 UGT2B15P54855 530 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 CDH6P55285 790 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 DAOAP59103 153 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 TNNC1P63316 161 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 SCRN3Q0VDG4 424 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 TCP10Q12799 353 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 KLRB1Q12918 225 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 ZNF829Q3KNS6 432 aaPredicted RBP1.65□□□□□ -2.15
CD44-239ENST00000639002 HIKESHIQ53FT3 197 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 CARD16Q5EG05 197 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 BEX5Q5H9J7 111 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 VAX1Q5SQQ9 334 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 C1orf220Q5T0J3 134 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 PDZK1Q5T2W1 519 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 ZNF684Q5T5D7 378 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 CNIH2Q6PI25 160 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 FAM92BQ6ZTR7 304 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 H2BFWTQ7Z2G1 175 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 ZNF546Q86UE3 836 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 ST13P4Q8IZP2 240 aaPredicted RBP1.65□□□□□ -2.15
CD44-239ENST00000639002 ASCC1Q8N9N2 400 aaKnown RBP1.65□□□□□ -2.15
CD44-239ENST00000639002 TMEM104Q8NE00 496 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 OR2G2Q8NGZ5 317 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 MAGEE2Q8TD90 523 aaPredicted RBP1.65□□□□□ -2.15
CD44-239ENST00000639002 CD300LFQ8TDQ1 290 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 ACOT11Q8WXI4 607 aaPredicted RBP1.65□□□□□ -2.15
CD44-239ENST00000639002 TBRG4Q969Z0 631 aaKnown RBP eCLIP1.65□□□□□ -2.15
CD44-239ENST00000639002 DNAJC19Q96DA6 116 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 HSFY1Q96LI6 401 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 TGS1Q96RS0 853 aaKnown RBP1.65□□□□□ -2.15
CD44-239ENST00000639002 PARD6BQ9BYG5 372 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 MFFQ9GZY8 342 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 PPA2Q9H2U2 334 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 RPP21Q9H633 154 aaKnown RBP1.65□□□□□ -2.15
CD44-239ENST00000639002 TREM1Q9NP99 234 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 DYRK4Q9NR20 520 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 PXMP2Q9NR77 195 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 SMOXQ9NWM0 555 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 LYARQ9NX58 379 aaKnown RBP1.65□□□□□ -2.15
CD44-239ENST00000639002 STX18Q9P2W9 335 aaKnown RBP1.65□□□□□ -2.15
CD44-239ENST00000639002 ZNF639Q9UID6 485 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 TBC1D24Q9ULP9 559 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 MMP17Q9ULZ9 603 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 FLVCR2Q9UPI3 526 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 C15orf41Q9Y2V0 281 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 KCNIP3Q9Y2W7 256 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 V9GYY5 206 aaPredicted RBP1.65□□□□□ -2.15
CD44-239ENST00000639002 GPATCH8Q9UKJ3 1502 aaKnown RBP1.65□□□□□ -2.15
CD44-239ENST00000639002 PHLPP2Q6ZVD8 1323 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 FCGBPQ9Y6R7 5405 aaPredicted RBP1.64□□□□□ -2.15
CD44-239ENST00000639002 IGLV3-12A0A075B6K2 115 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 IGHV5-51A0A0C4DH38 117 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 RAB19A4D1S5 217 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 OR2AG2A6NM03 316 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 PDZK1P1A8MUH7 402 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 C12orf77C9JDV5 145 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 HAS3O00219 553 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 HSD17B6O14756 317 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 AIM2O14862 343 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 BCKDKO14874 412 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 PRKAB2O43741 272 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 RAMP3O60896 148 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 CRYGBP07316 175 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 CSF3P09919 207 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 PRPS2P11908 318 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 CCNB1P14635 433 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 HOXB8P17481 243 aaPredicted RBP1.64□□□□□ -2.15
CD44-239ENST00000639002 SRMP19623 302 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 GSTM3P21266 225 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 IFNA8P32881 189 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 NAMPTP43490 491 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 QARSP47897 775 aaKnown RBP1.64□□□□□ -2.15
CD44-239ENST00000639002 UQCRFS1P47985 274 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 CSNK1EP49674 416 aaKnown RBP1.64□□□□□ -2.15
CD44-239ENST00000639002 DUSP3P51452 185 aaPredicted RBP1.64□□□□□ -2.15
CD44-239ENST00000639002 ACLYP53396 1101 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 FGF8P55075 233 aaPredicted RBP1.64□□□□□ -2.15
CD44-239ENST00000639002 CDK16Q00536 496 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 LIPEQ05469 1076 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 VPS26BQ4G0F5 336 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 MLIPQ5VWP3 458 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 SLC8B1Q6J4K2 584 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 LCN12Q6JVE5 192 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 DEGS2Q6QHC5 323 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 SNX20Q7Z614 316 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 THOC6Q86W42 341 aaKnown RBP1.64□□□□□ -2.15
CD44-239ENST00000639002 OR7G2Q8NG99 324 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 OR13C9Q8NGT0 318 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 OR2G3Q8NGZ4 309 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 LKAAEAR1Q8TD35 194 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 SDR42E1Q8WUS8 393 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 C17orf50Q8WW18 174 aa1.64□□□□□ -2.15
CD44-239ENST00000639002 GEMIN6Q8WXD5 167 aaKnown RBP1.64□□□□□ -2.15
CD44-239ENST00000639002 RGP1Q92546 391 aaPredicted RBP1.64□□□□□ -2.15
CD44-239ENST00000639002 ELMO1Q92556 727 aa1.64□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms