RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 PRSS48Q7RTY5 328 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 GDPD1Q8N9F7 314 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 OR1J1Q8NGS3 322 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 OR6S1Q8NH40 331 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 LILRB1Q8NHL6 650 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-217ENST00000637988 SLC45A3Q96JT2 553 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 MRGPRX3Q96LB0 322 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 HYLS1Q96M11 299 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 CCDC106Q9BWC9 280 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 RPS10P5Q9NQ39 176 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 ETV7Q9Y603 341 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 LTBP4Q8N2S1 1624 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 LILRA5A6NI73 299 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 SIRPB1O00241 398 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 SMPD2O60906 423 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 LIPAP38571 399 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 GSCP56915 257 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-217ENST00000637988 DHODHQ02127 395 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 FAM53BQ14153 422 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 FZD2Q14332 565 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 KCNMB1Q16558 191 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 CD276Q5ZPR3 534 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 BHLHA15Q7RTS1 189 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-217ENST00000637988 NLRP8Q86W28 1048 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 C8orf44Q96CB5 159 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 SUCNR1Q9BXA5 334 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 SLCO5A1Q9H2Y9 848 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 P4HTMQ9NXG6 502 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 KCNG2Q9UJ96 466 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 URGCP-MRPS24S4R325 110 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 FAM183AA6NL82 134 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 MRPS14O60783 128 aaKnown RBP5.6□□□□□ -1.51
SCN1A-217ENST00000637988 OR2J3O76001 311 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 FAHP16930 419 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 ID1P41134 155 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 ARSDP51689 593 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 NFATC3Q12968 1075 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 KCNAB2Q13303 367 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF750Q32MQ0 723 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 SFRP4Q6FHJ7 346 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-217ENST00000637988 DGAT2L7PQ6IED9 249 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 PRSS35Q8N3Z0 413 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 OR13C2Q8NGS9 318 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 OR13D1Q8NGV5 346 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 ADAMTS14Q8WXS8 1223 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 APOBEC3DQ96AK3 386 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-217ENST00000637988 ACPTQ9BZG2 426 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 EMC7Q9NPA0 242 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 ALS2Q96Q42 1657 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 SDCBPO00560 298 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-217ENST00000637988 MBTPS2O43462 519 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 GPRIN2O60269 458 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 HMGN3Q15651 99 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 STUMQ69YW2 141 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 OR52L2PQ8NGH6 319 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 OR13G1Q8NGZ3 307 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 PELI1Q96FA3 418 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 NUDT16L1Q9BRJ7 211 aaKnown RBP5.6□□□□□ -1.51
SCN1A-217ENST00000637988 LIN28AQ9H9Z2 209 aaKnown RBP5.6□□□□□ -1.51
SCN1A-217ENST00000637988 TAAR3PQ9P1P4 343 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 FRS3O43559 492 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 RBP4P02753 201 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 IL7P13232 177 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 OMGP23515 440 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 IMPA1P29218 277 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 SH3BP2P78314 561 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 ZXDBP98169 803 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 CLPPQ16740 277 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-217ENST00000637988 IZUMO4Q1ZYL8 232 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 RTN4RL1Q86UN2 441 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-217ENST00000637988 LINC00346Q8IVM7 164 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 PHC2Q8IXK0 858 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 OR9Q2Q8NGE9 314 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 C7orf43Q8WVR3 580 aa5.6□□□□□ -1.51
SCN1A-217ENST00000637988 KHSRPQ92945 711 aaKnown RBP eCLIP5.6□□□□□ -1.512e-6■■■□□ 17.2
SCN1A-217ENST00000637988 A0A1W2PN81 502 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 CHRNB1P11230 501 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 CHRNA7P36544 502 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 RFC3P40938 356 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 RAB7AP51149 207 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 RPL27P61353 136 aaKnown RBP5.59□□□□□ -1.51
SCN1A-217ENST00000637988 TBRG1Q3YBR2 411 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 KHDC1Q4VXA5 237 aaKnown RBP5.59□□□□□ -1.51
SCN1A-217ENST00000637988 WIPI1Q5MNZ9 446 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-217ENST00000637988 LIPNQ5VXI9 398 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 GDPGP1Q6ZNW5 385 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 OR5D18Q8NGL1 313 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 SLC22A12Q96S37 553 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 SAV1Q9H4B6 383 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-217ENST00000637988 CACNG2Q9Y698 323 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 A0A1W2PQL4 384 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-217ENST00000637988 GFYI3L273 518 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 CD14P08571 375 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 CD22P20273 847 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 HTR2BP41595 481 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 PXDC1Q5TGL8 231 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 GALNT16Q8N428 558 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 SPICQ8N5J4 248 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF740Q8NDX6 193 aa5.59□□□□□ -1.51
SCN1A-217ENST00000637988 PLPP5Q8NEB5 264 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms