RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 KCNIP4Q6PIL6 250 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 MYEOVQ96EZ4 313 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 HIST1H2AAQ96QV6 131 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 ZBP1Q9H171 429 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 PORCNQ9H237 461 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 SMDT1Q9H4I9 107 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 B3GAT1Q9P2W7 334 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 APOBEC3BQ9UH17 382 aaKnown RBP5.23□□□□□ -1.57
SCN1A-216ENST00000637968 ZNF337Q9Y3M9 751 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 ETV7Q9Y603 341 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 SIGLEC1Q9BZZ2 1709 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 TRBV2A0A0J9YWF9 115 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 FAM227AF5H4B4 570 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 CD8AP01732 235 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 TDGF1P13385 188 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 F3P13726 295 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 CR2P20023 1033 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 FCARP24071 287 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 ARR3P36575 388 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 BUD31P41223 144 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-216ENST00000637968 LPAR6P43657 344 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 ZP2Q05996 745 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 ADIGQ0VDE8 80 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 NFATC2Q13469 925 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 SNAI3Q3KNW1 292 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 TMEM268Q5VZI3 342 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 GPRIN1Q7Z2K8 1008 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 ZNF440Q8IYI8 595 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 OR52R1Q8NGF1 315 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 OR9A4Q8NGU2 314 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 CPT1CQ8TCG5 803 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 SLC25A51Q9H1U9 297 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 FBXW2Q9UKT8 454 aa5.23□□□□□ -1.57
SCN1A-216ENST00000637968 TRAV1-2A0A0B4J238 106 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 H0Y8G0 127 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 RAB29O14966 203 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 IL6RP08887 468 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-216ENST00000637968 ANXA4P09525 319 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-216ENST00000637968 CDK2P24941 298 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 SCNN1AP37088 669 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 OR3A2P47893 321 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 EFNA3P52797 238 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 BIDP55957 195 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 MLF1P58340 268 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 SLC35A1P78382 337 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 HSD11B2P80365 405 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 PCBP2Q15366 365 aaKnown RBP eCLIP5.22□□□□□ -1.57
SCN1A-216ENST00000637968 FAM27D1Q5T7N8 215 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 NOXRED1Q6NXP6 359 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 MPZL3Q6UWV2 235 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 METTL27Q8N6F8 245 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-216ENST00000637968 SLC38A9Q8NBW4 561 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 RCBTB1Q8NDN9 531 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 OR4B1Q8NGF8 309 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 ADAMTS17Q8TE56 1095 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 ZCCHC14Q8WYQ9 949 aaKnown RBP5.22□□□□□ -1.57
SCN1A-216ENST00000637968 PPP1R14AQ96A00 147 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 PINX1Q96BK5 328 aaKnown RBP5.22□□□□□ -1.57
SCN1A-216ENST00000637968 MACROD1Q9BQ69 325 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 TMEM100Q9NV29 134 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 ASIC5Q9NY37 505 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 TRAV14DV4A0A0A6YYC5 116 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 SLC22A31A6NKX4 558 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 CCL25O15444 150 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 B3GAT3O94766 335 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 FGF1P05230 155 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 ADCYAP1R1P41586 468 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 GUCA1AP43080 201 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-216ENST00000637968 SLC11A1P49279 550 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 SPOCK1Q08629 439 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 LYPLAL1Q5VWZ2 237 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 FDX2Q6P4F2 183 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 CXCL17Q6UXB2 119 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 LYG2Q86SG7 212 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 Q8WTZ3 238 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 OR1E3Q8WZA6 343 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 PSMF1Q92530 271 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 GHSRQ92847 366 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 TMEM186Q96B77 213 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 SMIM8Q96KF7 97 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 GINS3Q9BRX5 216 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 OR10A5Q9H207 317 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 TMEM134Q9H6X4 195 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 OR5AC2Q9NZP5 309 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 MARCH4Q9P2E8 410 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-216ENST00000637968 FOXJ3Q9UPW0 622 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 EVPLQ92817 2033 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 ZNF749O43361 778 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 CTXN2P0C2S0 81 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 TACR2P21452 398 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 HINT1P49773 126 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-216ENST00000637968 BLKP51451 505 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 STC1P52823 247 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 SNRPNP63162 240 aaKnown RBP5.22□□□□□ -1.57
SCN1A-216ENST00000637968 LTBQ06643 244 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 SCAPQ12770 1279 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 EIF2B1Q14232 305 aaKnown RBP5.22□□□□□ -1.57
SCN1A-216ENST00000637968 ZNF343Q6P1L6 599 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 TMEM207Q6UWW9 146 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 GBGT1Q8N5D6 347 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms