RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 SEC61A2Q9H9S3 476 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 ADGRL4Q9HBW9 690 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 VCX3AQ9NNX9 186 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 B3GNT2Q9NY97 397 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 CISD1Q9NZ45 108 aaKnown RBP8.57□□□□□ -1.04
CLN3-261ENST00000637686 ZNF224Q9NZL3 707 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 AASSQ9UDR5 926 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 POU2F3Q9UKI9 436 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 EXOSC1Q9Y3B2 195 aaKnown RBP8.57□□□□□ -1.04
CLN3-261ENST00000637686 SNX5Q9Y5X3 404 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 TMEM14AQ9Y6G1 99 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 ANKRD17O75179 2603 aaKnown RBP8.57□□□□□ -1.04
CLN3-261ENST00000637686 CADP27708 2225 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 ROS1P08922 2347 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 TMEM129A0AVI4 362 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 E7EQL1 145 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 ATP6V1G2-DDX39BF2Z307 99 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 H7C1C5 153 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 PHYHO14832 338 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 SLC16A7O60669 478 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 UBL3O95164 117 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 RAB36O95755 333 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 IGKV3-15P01624 115 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 HTR1AP08908 422 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 OR2T7P0C7T2 308 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 CECR9P0C854 216 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 PATE4P0C8F1 98 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 SMIM18P0DKX4 95 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 MYL12AP19105 171 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 EEF1B2P24534 225 aaKnown RBP8.56□□□□□ -1.04
CLN3-261ENST00000637686 CDAP32320 146 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 ARR3P36575 388 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 NUDT6P53370 316 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 RPS7P62081 194 aaKnown RBP8.56□□□□□ -1.04
CLN3-261ENST00000637686 LSM6P62312 80 aaKnown RBP8.56□□□□□ -1.04
CLN3-261ENST00000637686 LCN6P62502 163 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 NAAAQ02083 359 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 GSG1Q2KHT4 349 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 C3orf36Q3SXR2 165 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 B3GLCTQ6Y288 498 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 AHSA2Q719I0 299 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 RHOUQ7L0Q8 258 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 SHFQ7M4L6 423 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 SLC16A9Q7RTY1 509 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 MYPOPQ86VE0 399 aaPredicted RBP8.56□□□□□ -1.04
CLN3-261ENST00000637686 TIGD4Q8IY51 512 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 LRRC18Q8N456 261 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 STX19Q8N4C7 294 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 ACBD7Q8N6N7 88 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 SLC26A10Q8NG04 563 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 OR52I1Q8NGK6 324 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 OR9Q1Q8NGQ5 310 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 OR2T27Q8NH04 317 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 FGFBP3Q8TAT2 258 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 SMAP2Q8WU79 429 aaPredicted RBP8.56□□□□□ -1.04
CLN3-261ENST00000637686 NANOS1Q8WY41 292 aaKnown RBP8.56□□□□□ -1.04
CLN3-261ENST00000637686 PIGTQ969N2 578 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 FOXC2Q99958 501 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 MED20Q9H944 212 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 NOX3Q9HBY0 568 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 MOV10Q9HCE1 1003 aaKnown RBP8.56□□□□□ -1.04
CLN3-261ENST00000637686 PAK1IP1Q9NWT1 392 aaPredicted RBP8.56□□□□□ -1.04
CLN3-261ENST00000637686 UGT2A1Q9Y4X1 527 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 ATP23Q9Y6H3 246 aa8.56□□□□□ -1.04
CLN3-261ENST00000637686 HEATR1Q9H583 2144 aaKnown RBP8.56□□□□□ -1.04
CLN3-261ENST00000637686 DSCAMO60469 2012 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 PTGES3LE9PB15 166 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 DCTN6O00399 190 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 TMCC2O75069 709 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 FARS2O95363 451 aaKnown RBP8.55□□□□□ -1.04
CLN3-261ENST00000637686 GYPBP06028 91 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 SOD3P08294 240 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 RPSAP08865 295 aaKnown RBP8.55□□□□□ -1.04
CLN3-261ENST00000637686 DANCRP0C864 163 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 GAAP10253 952 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 CLUP10909 449 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 JUNBP17275 347 aaPredicted RBP8.55□□□□□ -1.04
CLN3-261ENST00000637686 NPR2P20594 1047 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 LAP3P28838 519 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 CALCRP30988 508 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 ATP6V1E1P36543 226 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 GUCA1AP43080 201 aaPredicted RBP8.55□□□□□ -1.04
CLN3-261ENST00000637686 FABP6P51161 128 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 RAB1AP62820 205 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 MRPS34P82930 218 aaKnown RBP8.55□□□□□ -1.04
CLN3-261ENST00000637686 MRPL28Q13084 256 aaKnown RBP8.55□□□□□ -1.04
CLN3-261ENST00000637686 TESK1Q15569 626 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 ETFDHQ16134 617 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 SGCAQ16586 387 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 SLC16A14Q7RTX9 510 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 BCDIN3DQ7Z5W3 292 aaKnown RBP8.55□□□□□ -1.04
CLN3-261ENST00000637686 DPPA2Q7Z7J5 298 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 SYT9Q86SS6 491 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 SPARTQ8N0X7 666 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 SYS1Q8N2H4 156 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 OR6K6Q8NGW6 343 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 OR52N1Q8NH53 320 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 TMEM171Q8WVE6 324 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 IGFBPL1Q8WX77 278 aa8.55□□□□□ -1.04
CLN3-261ENST00000637686 OTULINQ96BN8 352 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms