RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 MARVELD1Q9BSK0 173 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 ALG5Q9Y673 324 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 KNTC1P50748 2209 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 AHCTF1Q8WYP5 2266 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 LMX1BO60663 402 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 CBR3O75828 277 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 QDPRP09417 244 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 HOXD11P31277 338 aaPredicted RBP13.9□□□□□ -0.18
CLN3-251ENST00000636853 ART1P52961 327 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 GPR85P60893 370 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 H3F3AP84243 136 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 ACER2Q5QJU3 275 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 CDCP2Q5VXM1 449 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 SLC25A47Q6Q0C1 308 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 DHRS13Q6UX07 377 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 CFAP77Q6ZQR2 320 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 RFPL4BQ6ZWI9 263 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 ZNF227Q86WZ6 799 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 FAM109AQ8N4B1 249 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 OR10S1Q8NGN2 331 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 S100A16Q96FQ6 103 aaKnown RBP13.9□□□□□ -0.18
CLN3-251ENST00000636853 MRI1Q9BV20 369 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 C1orf198Q9H425 327 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 TAS2R4Q9NYW5 299 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 STEAP1Q9UHE8 339 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 FOXJ3Q9UPW0 622 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 POLR1DQ9Y2S0 133 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 LHFPL6Q9Y693 200 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 LOC107986453A0A1B0GWG9 222 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 TNFSF11O14788 317 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 CTDSPLO15194 276 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 TMEM127O75204 238 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 MT-CO3P00414 261 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 PTHLHP12272 177 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 PLA1AQ53H76 456 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 DEGS2Q6QHC5 323 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 YRDCQ86U90 279 aaKnown RBP13.89□□□□□ -0.19
CLN3-251ENST00000636853 PLPP7Q8NBV4 271 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 OR13C3Q8NGS6 347 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 SMIM4Q8WVI0 70 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 THRSPQ92748 146 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 FYTTD1Q96QD9 318 aaKnown RBP13.89□□□□□ -0.19
CLN3-251ENST00000636853 EDEM2Q9BV94 578 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 KCNK15Q9H427 330 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 MRPL15Q9P015 296 aaKnown RBP13.89□□□□□ -0.19
CLN3-251ENST00000636853 GDF2Q9UK05 429 aaPredicted RBP13.89□□□□□ -0.19
CLN3-251ENST00000636853 MRPS18BQ9Y676 258 aaKnown RBP13.89□□□□□ -0.19
CLN3-251ENST00000636853 LOC102725191A0A1B0GVB3 256 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 P2RY10O00398 339 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 GSTZ1O43708 216 aaPredicted RBP13.89□□□□□ -0.19
CLN3-251ENST00000636853 ICMTO60725 284 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 ITGA5P08648 1049 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 CSRP1P21291 193 aaKnown RBP13.89□□□□□ -0.19
CLN3-251ENST00000636853 CDK2P24941 298 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 DLSTP36957 453 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 OR3A3P47888 321 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 RIPPLY1Q0D2K3 151 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 TMEM69Q5SWH9 247 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 HACD4Q5VWC8 232 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 H3F3CQ6NXT2 135 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 CCDC28AQ8IWP9 274 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 BEST3Q8N1M1 668 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 OR51D1Q8NGF3 324 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 BEX2Q9BXY8 128 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 HHLA2Q9UM44 414 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 ETV7Q9Y603 341 aa13.89□□□□□ -0.19
CLN3-251ENST00000636853 A0A0J9YW62 118 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 LOC105371267A0A1B0GV96 52 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 INMT-MINDY4F8WBC2 141 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 SHOXO15266 292 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 SERPINA7P05543 415 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 CD2P06729 351 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 GDNFP39905 211 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 HTR2BP41595 481 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 PTH2RP49190 550 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 OC90Q02509 493 aaPredicted RBP13.88□□□□□ -0.19
CLN3-251ENST00000636853 HIST3H3Q16695 136 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 BCL2L15Q5TBC7 163 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 HDDC2Q7Z4H3 204 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 OR52I2Q8NH67 350 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 RAB40AQ8WXH6 277 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 PSMF1Q92530 271 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 HAVCR1Q96D42 359 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 ZNF385AQ96PM9 386 aaKnown RBP13.88□□□□□ -0.19
CLN3-251ENST00000636853 PIGQQ9BRB3 760 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 FAM206AQ9NX38 181 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 CCDC187A0A096LP49 1063 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 ORC5O43913 435 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 ISG15P05161 165 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 RFPL3SP0C7P2 107 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 SDHBP21912 280 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 ENPP1P22413 925 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 AP2S1P53680 142 aaPredicted RBP13.88□□□□□ -0.19
CLN3-251ENST00000636853 IKZF1Q13422 519 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 TMEM164Q5U3C3 297 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 SPERTQ8NA61 448 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 OR51A2Q8NGJ7 313 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 THOC3Q96J01 351 aaKnown RBP13.88□□□□□ -0.19
CLN3-251ENST00000636853 ASH2LQ9UBL3 628 aa13.88□□□□□ -0.19
CLN3-251ENST00000636853 TRAV6A0A075B6T7 132 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms