RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 FBXL14Q8N1E6 418 aa15.38■□□□□ 0.05
CLN3-247ENST00000636351 EME1Q96AY2 570 aa15.38■□□□□ 0.05
CLN3-247ENST00000636351 DDOQ99489 341 aa15.38■□□□□ 0.05
CLN3-247ENST00000636351 DHRS9Q9BPW9 319 aa15.38■□□□□ 0.05
CLN3-247ENST00000636351 NMNAT2Q9BZQ4 307 aa15.38■□□□□ 0.05
CLN3-247ENST00000636351 YAE1D1Q9NRH1 226 aa15.38■□□□□ 0.05
CLN3-247ENST00000636351 PLEK2Q9NYT0 353 aa15.38■□□□□ 0.05
CLN3-247ENST00000636351 GDF2Q9UK05 429 aaPredicted RBP15.38■□□□□ 0.05
CLN3-247ENST00000636351 SPEF1Q9Y4P9 236 aa15.38■□□□□ 0.05
CLN3-247ENST00000636351 C5orf49A4QMS7 147 aa15.37■□□□□ 0.05
CLN3-247ENST00000636351 CD5LO43866 347 aa15.37■□□□□ 0.05
CLN3-247ENST00000636351 TFP02787 698 aa15.37■□□□□ 0.05
CLN3-247ENST00000636351 ALPLP05186 524 aa15.37■□□□□ 0.05
CLN3-247ENST00000636351 STOMP27105 288 aa15.37■□□□□ 0.05
CLN3-247ENST00000636351 EPHA2P29317 976 aa15.37■□□□□ 0.05
CLN3-247ENST00000636351 FMO3P31513 532 aa15.37■□□□□ 0.05
CLN3-247ENST00000636351 RAD23AP54725 363 aa15.37■□□□□ 0.05
CLN3-247ENST00000636351 RPS7P62081 194 aaKnown RBP15.37■□□□□ 0.05
CLN3-247ENST00000636351 KCNMB1Q16558 191 aa15.37■□□□□ 0.05
CLN3-247ENST00000636351 KLHL12Q53G59 568 aa15.37■□□□□ 0.05
CLN3-247ENST00000636351 CORO6Q6QEF8 472 aa15.37■□□□□ 0.05
CLN3-247ENST00000636351 LYPD4Q6UWN0 246 aa15.37■□□□□ 0.05
CLN3-247ENST00000636351 DNM1P46Q6ZS02 220 aa15.37■□□□□ 0.05
CLN3-247ENST00000636351 LINC00346Q8IVM7 164 aa15.37■□□□□ 0.05
CLN3-247ENST00000636351 CPEB3Q8NE35 698 aaKnown RBP15.37■□□□□ 0.05
CLN3-247ENST00000636351 OR2AJ1Q8NGZ0 328 aa15.37■□□□□ 0.05
CLN3-247ENST00000636351 WACQ9BTA9 647 aa15.37■□□□□ 0.05
CLN3-247ENST00000636351 TRAF4Q9BUZ4 470 aaPredicted RBP15.37■□□□□ 0.05
CLN3-247ENST00000636351 HCAR1Q9BXC0 346 aa15.37■□□□□ 0.05
CLN3-247ENST00000636351 GABARAPL3Q9BY60 117 aa15.37■□□□□ 0.05
CLN3-247ENST00000636351 OR51B6Q9H340 312 aa15.37■□□□□ 0.05
CLN3-247ENST00000636351 CA10Q9NS85 328 aa15.37■□□□□ 0.05
CLN3-247ENST00000636351 USE1Q9NZ43 259 aa15.37■□□□□ 0.05
CLN3-247ENST00000636351 CHD3Q12873 2000 aaKnown RBP15.37■□□□□ 0.05
CLN3-247ENST00000636351 ZAR1LA6NP61 321 aa15.36■□□□□ 0.05
CLN3-247ENST00000636351 RNF212BA8MTL3 300 aa15.36■□□□□ 0.05
CLN3-247ENST00000636351 M0R129 80 aa15.36■□□□□ 0.05
CLN3-247ENST00000636351 TLX2O43763 284 aaPredicted RBP15.36■□□□□ 0.05
CLN3-247ENST00000636351 CD8AP01732 235 aa15.36■□□□□ 0.05
CLN3-247ENST00000636351 HGFACQ04756 655 aa15.36■□□□□ 0.05
CLN3-247ENST00000636351 AGAP6Q5VW22 663 aa15.36■□□□□ 0.05
CLN3-247ENST00000636351 SLX4IPQ5VYV7 408 aa15.36■□□□□ 0.05
CLN3-247ENST00000636351 ZNF544Q6NX49 715 aa15.36■□□□□ 0.05
CLN3-247ENST00000636351 ZBTB49Q6ZSB9 765 aa15.36■□□□□ 0.05
CLN3-247ENST00000636351 CPOQ8IVL8 374 aa15.36■□□□□ 0.05
CLN3-247ENST00000636351 NUP37Q8NFH4 326 aa15.36■□□□□ 0.05
CLN3-247ENST00000636351 ZNRF4Q8WWF5 429 aa15.36■□□□□ 0.05
CLN3-247ENST00000636351 HINT3Q9NQE9 182 aaKnown RBP15.36■□□□□ 0.05
CLN3-247ENST00000636351 MRPL22Q9NWU5 206 aaKnown RBP15.36■□□□□ 0.05
CLN3-247ENST00000636351 KCNG2Q9UJ96 466 aa15.36■□□□□ 0.05
CLN3-247ENST00000636351 NDRG4Q9ULP0 352 aaKnown RBP15.36■□□□□ 0.05
CLN3-247ENST00000636351 LHFPL6Q9Y693 200 aa15.36■□□□□ 0.05
CLN3-247ENST00000636351 COMMD3-BMI1R4GMX3 469 aa15.36■□□□□ 0.05
CLN3-247ENST00000636351 CUBNO60494 3623 aa15.36■□□□□ 0.05
CLN3-247ENST00000636351 RTTNQ86VV8 2226 aa15.35■□□□□ 0.05
CLN3-247ENST00000636351 RER1O15258 196 aa15.35■□□□□ 0.05
CLN3-247ENST00000636351 SPARCP09486 303 aa15.35■□□□□ 0.05
CLN3-247ENST00000636351 FAM157BP0CG42 384 aa15.35■□□□□ 0.05
CLN3-247ENST00000636351 ZNF35P13682 527 aa15.35■□□□□ 0.05
CLN3-247ENST00000636351 ANPEPP15144 967 aa15.35■□□□□ 0.05
CLN3-247ENST00000636351 POLR2IP36954 125 aaKnown RBP15.35■□□□□ 0.05
CLN3-247ENST00000636351 BLVRAP53004 296 aa15.35■□□□□ 0.05
CLN3-247ENST00000636351 RPS23P62266 143 aaKnown RBP15.35■□□□□ 0.05
CLN3-247ENST00000636351 TRIP10Q15642 601 aa15.35■□□□□ 0.05
CLN3-247ENST00000636351 ZIK1Q3SY52 487 aaPredicted RBP15.35■□□□□ 0.05
CLN3-247ENST00000636351 TMEM154Q6P9G4 183 aa15.35■□□□□ 0.05
CLN3-247ENST00000636351 VASH1Q7L8A9 365 aaPredicted RBP15.35■□□□□ 0.05
CLN3-247ENST00000636351 ERI1Q8IV48 349 aaKnown RBP15.35■□□□□ 0.05
CLN3-247ENST00000636351 MUC15Q8N387 334 aa15.35■□□□□ 0.05
CLN3-247ENST00000636351 PAQR4Q8N4S7 273 aaPredicted RBP15.35■□□□□ 0.05
CLN3-247ENST00000636351 ZNF511Q8NB15 262 aa15.35■□□□□ 0.05
CLN3-247ENST00000636351 BBS1Q8NFJ9 593 aa15.35■□□□□ 0.05
CLN3-247ENST00000636351 GJC3Q8NFK1 279 aa15.35■□□□□ 0.05
CLN3-247ENST00000636351 GRIP2Q9C0E4 1043 aa15.35■□□□□ 0.05
CLN3-247ENST00000636351 VSTM5A8MXK1 200 aa15.34■□□□□ 0.05
CLN3-247ENST00000636351 PRKYO43930 277 aa15.34■□□□□ 0.05
CLN3-247ENST00000636351 SSX4O60224 188 aa15.34■□□□□ 0.05
CLN3-247ENST00000636351 GPRIN2O60269 458 aa15.34■□□□□ 0.05
CLN3-247ENST00000636351 GLCEO94923 617 aa15.34■□□□□ 0.05
CLN3-247ENST00000636351 NR4A1P22736 598 aa15.34■□□□□ 0.05
CLN3-247ENST00000636351 GSTT1P30711 240 aa15.34■□□□□ 0.05
CLN3-247ENST00000636351 APOBEC3AP31941 199 aaPredicted RBP15.34■□□□□ 0.05
CLN3-247ENST00000636351 TTKP33981 857 aa15.34■□□□□ 0.05
CLN3-247ENST00000636351 THBS4P35443 961 aa15.34■□□□□ 0.05
CLN3-247ENST00000636351 RPS27P42677 84 aaKnown RBP15.34■□□□□ 0.05
CLN3-247ENST00000636351 ENTPD1P49961 510 aa15.34■□□□□ 0.05
CLN3-247ENST00000636351 ELF3P78545 371 aaPredicted RBP15.34■□□□□ 0.05
CLN3-247ENST00000636351 RAB35Q15286 201 aa15.34■□□□□ 0.05
CLN3-247ENST00000636351 C12orf73Q69YU5 71 aa15.34■□□□□ 0.05
CLN3-247ENST00000636351 DTX2Q86UW9 622 aa15.34■□□□□ 0.05
CLN3-247ENST00000636351 TCEANCQ8N8B7 351 aa15.34■□□□□ 0.05
CLN3-247ENST00000636351 ZMYND19Q96E35 227 aaPredicted RBP15.34■□□□□ 0.05
CLN3-247ENST00000636351 POM121L2Q96KW2 1035 aa15.34■□□□□ 0.05
CLN3-247ENST00000636351 INTS14Q96SY0 518 aa15.34■□□□□ 0.05
CLN3-247ENST00000636351 PITX2Q99697 317 aa15.34■□□□□ 0.05
CLN3-247ENST00000636351 WDR76Q9H967 626 aa15.34■□□□□ 0.05
CLN3-247ENST00000636351 BARX1Q9HBU1 254 aaPredicted RBP15.34■□□□□ 0.05
CLN3-247ENST00000636351 EIF3KQ9UBQ5 218 aaKnown RBP15.34■□□□□ 0.05
CLN3-247ENST00000636351 CR1P17927 2039 aa15.33■□□□□ 0.04
CLN3-247ENST00000636351 LOC100509620A0A075B734 347 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms