RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 KIR2DL2P43627 348 aaPredicted RBP12.52□□□□□ -0.4
USP39-220ENST00000613444 KIR3DL2P43630 455 aa12.52□□□□□ -0.4
USP39-220ENST00000613444 WDR38Q5JTN6 314 aa12.52□□□□□ -0.4
USP39-220ENST00000613444 FAM214BQ7L5A3 538 aa12.52□□□□□ -0.4
USP39-220ENST00000613444 ZNF100Q8IYN0 542 aa12.52□□□□□ -0.4
USP39-220ENST00000613444 IL17RDQ8NFM7 739 aa12.52□□□□□ -0.4
USP39-220ENST00000613444 MBD3L2Q8NHZ7 208 aaPredicted RBP12.52□□□□□ -0.4
USP39-220ENST00000613444 ABHD4Q8TB40 342 aa12.52□□□□□ -0.4
USP39-220ENST00000613444 FAM57AQ8TBR7 257 aa12.52□□□□□ -0.4
USP39-220ENST00000613444 C4orf45Q96LM5 186 aa12.52□□□□□ -0.4
USP39-220ENST00000613444 PPIL3Q9H2H8 161 aaKnown RBP12.52□□□□□ -0.4
USP39-220ENST00000613444 CENPMQ9NSP4 180 aa12.52□□□□□ -0.4
USP39-220ENST00000613444 ZNF587BE7ETH6 402 aa12.52□□□□□ -0.41
USP39-220ENST00000613444 WDR1O75083 606 aa12.52□□□□□ -0.41
USP39-220ENST00000613444 RGS9O75916 674 aaPredicted RBP12.52□□□□□ -0.41
USP39-220ENST00000613444 KRT33AO76009 404 aa12.52□□□□□ -0.41
USP39-220ENST00000613444 TOXO94900 526 aa12.52□□□□□ -0.41
USP39-220ENST00000613444 TPOP07202 933 aa12.52□□□□□ -0.41
USP39-220ENST00000613444 CD8BP10966 210 aa12.52□□□□□ -0.41
USP39-220ENST00000613444 GABRA1P14867 456 aa12.52□□□□□ -0.41
USP39-220ENST00000613444 TRAM1Q15629 374 aa12.52□□□□□ -0.41
USP39-220ENST00000613444 CCDC92Q53HC0 331 aaPredicted RBP12.52□□□□□ -0.41
USP39-220ENST00000613444 TFAP2EQ6VUC0 442 aa12.52□□□□□ -0.41
USP39-220ENST00000613444 USP43Q70EL4 1123 aa12.52□□□□□ -0.41
USP39-220ENST00000613444 CD163Q86VB7 1156 aa12.52□□□□□ -0.41
USP39-220ENST00000613444 MS4A15Q8N5U1 240 aa12.52□□□□□ -0.41
USP39-220ENST00000613444 TEX19Q8NA77 164 aa12.52□□□□□ -0.41
USP39-220ENST00000613444 FGFBP3Q8TAT2 258 aa12.52□□□□□ -0.41
USP39-220ENST00000613444 DDX28Q9NUL7 540 aaKnown RBP12.52□□□□□ -0.41
USP39-220ENST00000613444 ASF1BQ9NVP2 202 aa12.52□□□□□ -0.41
USP39-220ENST00000613444 R4GMQ9 66 aa12.52□□□□□ -0.41
USP39-220ENST00000613444 PMF1-BGLAPU3KQ54 211 aa12.52□□□□□ -0.41
USP39-220ENST00000613444 SHISA3A0PJX4 238 aa12.51□□□□□ -0.41
USP39-220ENST00000613444 ZNF878C9JN71 531 aa12.51□□□□□ -0.41
USP39-220ENST00000613444 GPRIN2O60269 458 aa12.51□□□□□ -0.41
USP39-220ENST00000613444 H2BFMP0C1H6 154 aa12.51□□□□□ -0.41
USP39-220ENST00000613444 DCTDP32321 178 aa12.51□□□□□ -0.41
USP39-220ENST00000613444 CCR9P51686 369 aa12.51□□□□□ -0.41
USP39-220ENST00000613444 ARF1P84077 181 aaKnown RBP12.51□□□□□ -0.41
USP39-220ENST00000613444 FAPQ12884 760 aa12.51□□□□□ -0.41
USP39-220ENST00000613444 FOXF2Q12947 444 aa12.51□□□□□ -0.41
USP39-220ENST00000613444 FBXW9Q5XUX1 488 aa12.51□□□□□ -0.41
USP39-220ENST00000613444 KLHL24Q6TFL4 600 aa12.51□□□□□ -0.41
USP39-220ENST00000613444 CATSPERDQ86XM0 798 aa12.51□□□□□ -0.41
USP39-220ENST00000613444 SKA3Q8IX90 412 aa12.51□□□□□ -0.41
USP39-220ENST00000613444 RPRMLQ8N4K4 120 aa12.51□□□□□ -0.41
USP39-220ENST00000613444 GJC3Q8NFK1 279 aa12.51□□□□□ -0.41
USP39-220ENST00000613444 PPP1R14AQ96A00 147 aa12.51□□□□□ -0.41
USP39-220ENST00000613444 SLC25A18Q9H1K4 315 aa12.51□□□□□ -0.41
USP39-220ENST00000613444 G6PC2Q9NQR9 355 aa12.51□□□□□ -0.41
USP39-220ENST00000613444 ZNF224Q9NZL3 707 aa12.51□□□□□ -0.41
USP39-220ENST00000613444 UPB1Q9UBR1 384 aa12.51□□□□□ -0.41
USP39-220ENST00000613444 SHANK1Q9Y566 2161 aa12.51□□□□□ -0.41
USP39-220ENST00000613444 IL18BPO95998 194 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 PTGER4P35408 488 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 SERPINB10P48595 397 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 MMP16P51512 607 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 RSPO1Q2MKA7 263 aaPredicted RBP12.5□□□□□ -0.41
USP39-220ENST00000613444 OR2A2Q6IF42 318 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 ZNF813Q6ZN06 617 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 KBTBD8Q8NFY9 601 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 DACH2Q96NX9 599 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 FAM206AQ9NX38 181 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 SLC22A13Q9Y226 551 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 ZNF281Q9Y2X9 895 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 TNFSF13O75888 250 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 ITGA5P08648 1049 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 MMP7P09237 267 aaPredicted RBP12.5□□□□□ -0.41
USP39-220ENST00000613444 CTSSP25774 331 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 RPS19P39019 145 aaKnown RBP12.5□□□□□ -0.41
USP39-220ENST00000613444 TUBA1BP68363 451 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 SF3B4Q15427 424 aaKnown RBP eCLIP12.5□□□□□ -0.413e-14■■■■■ 33.9
USP39-220ENST00000613444 ACSM3Q53FZ2 586 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 FAM27D1Q5T7N8 215 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 C1orf185Q5T7R7 199 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 C9orf135Q5VTT2 229 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 VWA1Q6PCB0 445 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 UNQ9370/PRO34162Q6UXP9 181 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 TUBA1AQ71U36 451 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 SYT9Q86SS6 491 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 UBE2J2Q8N2K1 259 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 OR5AK2Q8NH90 309 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 KCTD7Q96MP8 289 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 SLIRPQ9GZT3 109 aaKnown RBP12.5□□□□□ -0.41
USP39-220ENST00000613444 SLC5A6Q9Y289 635 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 ZNF835Q9Y2P0 537 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 EMC9Q9Y3B6 208 aa12.5□□□□□ -0.41
USP39-220ENST00000613444 FIGNL2A6NMB9 653 aa12.49□□□□□ -0.41
USP39-220ENST00000613444 TMEM212A6NML5 194 aa12.49□□□□□ -0.41
USP39-220ENST00000613444 PATE4P0C8F1 98 aa12.49□□□□□ -0.41
USP39-220ENST00000613444 ZNF32P17041 273 aa12.49□□□□□ -0.41
USP39-220ENST00000613444 OTX1P32242 354 aaPredicted RBP12.49□□□□□ -0.41
USP39-220ENST00000613444 KLRB1Q12918 225 aa12.49□□□□□ -0.41
USP39-220ENST00000613444 LSAMPQ13449 338 aa12.49□□□□□ -0.41
USP39-220ENST00000613444 YIF1BQ5BJH7 314 aa12.49□□□□□ -0.41
USP39-220ENST00000613444 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.49□□□□□ -0.41
USP39-220ENST00000613444 RDH10Q8IZV5 341 aa12.49□□□□□ -0.41
USP39-220ENST00000613444 GALNT8Q9NY28 637 aa12.49□□□□□ -0.41
USP39-220ENST00000613444 GSTK1Q9Y2Q3 226 aa12.49□□□□□ -0.41
USP39-220ENST00000613444 TMEM269A0A1B0GVZ9 245 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms