RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 SLC35F2Q8IXU6 374 aa11.08□□□□□ -0.64
UPF1-208ENST00000600012 C20orf196Q8IYI0 205 aa11.08□□□□□ -0.64
UPF1-208ENST00000600012 RFLNBQ8N5W9 214 aa11.08□□□□□ -0.64
UPF1-208ENST00000600012 POMGNT2Q8NAT1 580 aa11.08□□□□□ -0.64
UPF1-208ENST00000600012 OR6N2Q8NGY6 317 aa11.08□□□□□ -0.64
UPF1-208ENST00000600012 HTRA1Q92743 480 aa11.08□□□□□ -0.64
UPF1-208ENST00000600012 ALKBH3Q96Q83 286 aaPredicted RBP11.08□□□□□ -0.64
UPF1-208ENST00000600012 CDCA4Q9BXL8 241 aa11.08□□□□□ -0.64
UPF1-208ENST00000600012 ULBP2Q9BZM5 246 aa11.08□□□□□ -0.64
UPF1-208ENST00000600012 WDR76Q9H967 626 aa11.08□□□□□ -0.64
UPF1-208ENST00000600012 MRPL22Q9NWU5 206 aaKnown RBP11.08□□□□□ -0.64
UPF1-208ENST00000600012 COL6A5A8TX70 2615 aa11.08□□□□□ -0.64
UPF1-208ENST00000600012 ATRQ13535 2644 aa11.08□□□□□ -0.64
UPF1-208ENST00000600012 CADP27708 2225 aa11.07□□□□□ -0.64
UPF1-208ENST00000600012 ZNF724A8MTY0 619 aa11.07□□□□□ -0.64
UPF1-208ENST00000600012 MPZL1O95297 269 aa11.07□□□□□ -0.64
UPF1-208ENST00000600012 IGHV3-9P01782 118 aa11.07□□□□□ -0.64
UPF1-208ENST00000600012 LCKP06239 509 aa11.07□□□□□ -0.64
UPF1-208ENST00000600012 YES1P07947 543 aa11.07□□□□□ -0.64
UPF1-208ENST00000600012 LIMS3P0CW19 117 aa11.07□□□□□ -0.64
UPF1-208ENST00000600012 LIMS4P0CW20 117 aa11.07□□□□□ -0.64
UPF1-208ENST00000600012 MYL12AP19105 171 aa11.07□□□□□ -0.64
UPF1-208ENST00000600012 AGTR1P30556 359 aa11.07□□□□□ -0.64
UPF1-208ENST00000600012 DOC2BQ14184 412 aa11.07□□□□□ -0.64
UPF1-208ENST00000600012 TBCEQ15813 527 aaPredicted RBP11.07□□□□□ -0.64
UPF1-208ENST00000600012 LRFN4Q6PJG9 635 aa11.07□□□□□ -0.64
UPF1-208ENST00000600012 LHFPL3Q86UP9 236 aa11.07□□□□□ -0.64
UPF1-208ENST00000600012 TIGD4Q8IY51 512 aa11.07□□□□□ -0.64
UPF1-208ENST00000600012 STEAP2Q8NFT2 490 aa11.07□□□□□ -0.64
UPF1-208ENST00000600012 SPATA3Q8NHX4 192 aa11.07□□□□□ -0.64
UPF1-208ENST00000600012 INTS14Q96SY0 518 aa11.07□□□□□ -0.64
UPF1-208ENST00000600012 MARCH7Q9H992 704 aa11.07□□□□□ -0.64
UPF1-208ENST00000600012 VCX3AQ9NNX9 186 aa11.07□□□□□ -0.64
UPF1-208ENST00000600012 ACOT13Q9NPJ3 140 aa11.07□□□□□ -0.64
UPF1-208ENST00000600012 ERVK13-1Q9NX77 482 aa11.07□□□□□ -0.64
UPF1-208ENST00000600012 COPS3Q9UNS2 423 aa11.07□□□□□ -0.64
UPF1-208ENST00000600012 EXOSC1Q9Y3B2 195 aaKnown RBP11.07□□□□□ -0.64
UPF1-208ENST00000600012 UGT2A1Q9Y4X1 527 aa11.07□□□□□ -0.64
UPF1-208ENST00000600012 CR1P17927 2039 aa11.07□□□□□ -0.64
UPF1-208ENST00000600012 DAPL1A0PJW8 107 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 MYL12BO14950 172 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 MRPL33O75394 65 aaKnown RBP11.06□□□□□ -0.64
UPF1-208ENST00000600012 CRLF1O75462 422 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 INMTO95050 263 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 SCG5P05408 212 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 NR2C1P13056 603 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 LAP3P28838 519 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 CDAP32320 146 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 ALDH3B2P48448 385 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 ZNF85Q03923 595 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 GLO1Q04760 184 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 TNK1Q13470 666 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 C10orf128Q5T292 105 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 TSPO2Q5TGU0 170 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 OR2G6Q5TZ20 316 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 ADAM5Q6NVV9 412 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 LINGO2Q7L985 606 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 SSX6Q7RTT6 188 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 SLC16A9Q7RTY1 509 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 GLB1L2Q8IW92 636 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 GPR137CQ8N3F9 429 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 ACBD7Q8N6N7 88 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 SLC26A10Q8NG04 563 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 FNDC8Q8TC99 324 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 AKAP1Q92667 903 aaKnown RBP eCLIP11.06□□□□□ -0.64
UPF1-208ENST00000600012 MUL1Q969V5 352 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 TMIGD2Q96BF3 282 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 ZNF837Q96EG3 531 aaPredicted RBP11.06□□□□□ -0.64
UPF1-208ENST00000600012 OR5M11Q96RB7 305 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 ZNF649Q9BS31 505 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 ALG8Q9BVK2 526 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 JAM3Q9BX67 310 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 HDHD5Q9BXW7 423 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 SLCO5A1Q9H2Y9 848 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 C12orf49Q9H741 205 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 SEC61A2Q9H9S3 476 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 CHCHD3Q9NX63 227 aaKnown RBP11.06□□□□□ -0.64
UPF1-208ENST00000600012 LAMP3Q9UQV4 416 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 KLHDC2Q9Y2U9 406 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 RNF115Q9Y4L5 304 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 PCDHGB1Q9Y5G3 927 aa11.06□□□□□ -0.64
UPF1-208ENST00000600012 A0A1W2PQL4 384 aaPredicted RBP11.05□□□□□ -0.64
UPF1-208ENST00000600012 DHHO43323 396 aa11.05□□□□□ -0.64
UPF1-208ENST00000600012 SEC14L2O76054 403 aa11.05□□□□□ -0.64
UPF1-208ENST00000600012 SPARCP09486 303 aa11.05□□□□□ -0.64
UPF1-208ENST00000600012 JUNBP17275 347 aaPredicted RBP11.05□□□□□ -0.64
UPF1-208ENST00000600012 PSMB9P28065 219 aa11.05□□□□□ -0.64
UPF1-208ENST00000600012 RPL5P46777 297 aaKnown RBP11.05□□□□□ -0.64
UPF1-208ENST00000600012 ENTPD1P49961 510 aa11.05□□□□□ -0.64
UPF1-208ENST00000600012 ZNF133P52736 654 aaPredicted RBP11.05□□□□□ -0.64
UPF1-208ENST00000600012 BLVRAP53004 296 aa11.05□□□□□ -0.64
UPF1-208ENST00000600012 GP2P55259 537 aaKnown RBP11.05□□□□□ -0.64
UPF1-208ENST00000600012 ACTC1P68032 377 aa11.05□□□□□ -0.64
UPF1-208ENST00000600012 ACTA1P68133 377 aa11.05□□□□□ -0.64
UPF1-208ENST00000600012 HSF2Q03933 536 aa11.05□□□□□ -0.64
UPF1-208ENST00000600012 KRTAP1-1Q07627 177 aa11.05□□□□□ -0.64
UPF1-208ENST00000600012 CLEC12BQ2HXU8 276 aa11.05□□□□□ -0.64
UPF1-208ENST00000600012 RNLSQ5VYX0 342 aa11.05□□□□□ -0.64
UPF1-208ENST00000600012 DPY19L4Q7Z388 723 aa11.05□□□□□ -0.64
UPF1-208ENST00000600012 SATL1Q86VE3 508 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms