RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 SLC38A1Q9H2H9 487 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 RHBGQ9H310 441 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 OR51I1Q9H343 314 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 CDCP1Q9H5V8 836 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 UBTD1Q9HAC8 227 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 PELI2Q9HAT8 420 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 BARX1Q9HBU1 254 aaPredicted RBP3.72□□□□□ -1.81
LIG3-211ENST00000588713 NRIP3Q9NQ35 241 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 PHPT1Q9NRX4 125 aaPredicted RBP3.72□□□□□ -1.81
LIG3-211ENST00000588713 KLHL28Q9NXS3 571 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 HAO2Q9NYQ3 351 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 TAS2R10Q9NYW0 307 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 TAS2R8Q9NYW2 309 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 H2AFY2Q9P0M6 372 aaPredicted RBP3.72□□□□□ -1.81
LIG3-211ENST00000588713 CTSFQ9UBX1 484 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 FBXL2Q9UKC9 423 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 ADAM29Q9UKF5 820 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 SLC13A4Q9UKG4 626 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 KCNK6Q9Y257 313 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 MRPS2Q9Y399 296 aaKnown RBP3.72□□□□□ -1.81
LIG3-211ENST00000588713 TENM1Q9UKZ4 2725 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 FXYD6-FXYD2A0A087WZ82 144 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 KANTRA0A1W2PQU2 76 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 TSPAN11A1L157 253 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 LILRA5A6NI73 299 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 ACOD1A6NK06 481 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 TMEM150CB9EJG8 249 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 DISC1C4P0D8 188 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 MCIDASD6RGH6 385 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 H7BY64 318 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 PLPP1O14494 284 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 BHLHE40O14503 412 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 DVL2O14641 736 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 GOSR2O14653 212 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 LCMT2O60294 686 aaKnown RBP3.71□□□□□ -1.82
LIG3-211ENST00000588713 CDC40O60508 579 aaKnown RBP eCLIP3.71□□□□□ -1.82
LIG3-211ENST00000588713 B4GALT2O60909 372 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 KDM4BO94953 1096 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 C1orf105O95561 183 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 CD8AP01732 235 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 RLN2P04090 185 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 KLK1P06870 262 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 UMODP07911 640 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 CHRM4P08173 479 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 MELTFP08582 738 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 HOXC4P09017 264 aaPredicted RBP3.71□□□□□ -1.82
LIG3-211ENST00000588713 CSF1P09603 554 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 SBK2P0C263 348 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 ERGP11308 486 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 SLC25A4P12235 298 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 ZNF35P13682 527 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 CNR1P21554 472 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 DRD5P21918 477 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 SLC2A5P22732 501 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 HTR2AP28223 471 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 VIPR1P32241 457 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 PTGER1P34995 402 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 ATP6V1E1P36543 226 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 BUD31P41223 144 aaPredicted RBP3.71□□□□□ -1.82
LIG3-211ENST00000588713 RAD52P43351 418 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 GDI2P50395 445 aaKnown RBP3.71□□□□□ -1.82
LIG3-211ENST00000588713 MANFP55145 182 aaKnown RBP3.71□□□□□ -1.82
LIG3-211ENST00000588713 RAB5BP61020 215 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 POLR2GP62487 172 aaKnown RBP eCLIP3.71□□□□□ -1.82
LIG3-211ENST00000588713 PPIAP62937 165 aaKnown RBP3.71□□□□□ -1.82
LIG3-211ENST00000588713 DCDP81605 110 aaKnown RBP3.71□□□□□ -1.82
LIG3-211ENST00000588713 CDK3Q00526 305 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 REEP5Q00765 189 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 DEFA5Q01523 94 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 SRSF4Q08170 494 aaKnown RBP3.71□□□□□ -1.82
LIG3-211ENST00000588713 LGALS3BPQ08380 585 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 FUT5Q11128 374 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 STX4Q12846 297 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 HSPB3Q12988 150 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 GRM7Q14831 915 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 CDK5R1Q15078 307 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 TOMM20Q15388 145 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 SYPL1Q16563 259 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 PRSS53Q2L4Q9 553 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 SLC25A35Q3KQZ1 300 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 ZNF658BQ4V348 819 aaPredicted RBP3.71□□□□□ -1.82
LIG3-211ENST00000588713 ACSM3Q53FZ2 586 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 ZNF766Q5HY98 468 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 C10orf91Q5T1B1 145 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 SFRP5Q5T4F7 317 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 AVPI1Q5T686 147 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 FAM27D1Q5T7N8 215 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 FCRLBQ6BAA4 426 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 ARHGAP11AQ6P4F7 1023 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 NXPE4Q6UWF7 544 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 LRRN1Q6UXK5 716 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 GDPD4Q6W3E5 623 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 ZNF704Q6ZNC4 412 aaPredicted RBP3.71□□□□□ -1.82
LIG3-211ENST00000588713 LNX2Q8N448 690 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 KCNRGQ8N5I3 272 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 C12orf45Q8N5I9 185 aaPredicted RBP3.71□□□□□ -1.82
LIG3-211ENST00000588713 BBS1Q8NFJ9 593 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 OR2Y1Q8NGV0 311 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 OR6N1Q8NGY5 312 aa3.71□□□□□ -1.82
LIG3-211ENST00000588713 ZNF671Q8TAW3 534 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms