RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 LHX2P50458 406 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 CLDN15P56746 228 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 RPS11P62280 158 aaKnown RBP eCLIP9.2□□□□□ -0.94
LIG3-203ENST00000585370 FMODQ06828 376 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 STK11Q15831 433 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 ZNF181Q2M3W8 571 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 Q499Y3 187 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 HSD17B12Q53GQ0 312 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 RIPPLY2Q5TAB7 128 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 ABLIM2Q6H8Q1 611 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 KLHL24Q6TFL4 600 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 ZNF704Q6ZNC4 412 aaPredicted RBP9.2□□□□□ -0.94
LIG3-203ENST00000585370 FCRLAQ7L513 359 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 CHMP1BQ7LBR1 199 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 DCXRQ7Z4W1 244 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 TMEM123Q8N131 208 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 ZNF676Q8N7Q3 588 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 ZIC4Q8N9L1 334 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 MINDY2Q8NBR6 621 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 ST7LQ8TDW4 575 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 RNF133Q8WVZ7 376 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 RNF166Q96A37 237 aaPredicted RBP9.2□□□□□ -0.94
LIG3-203ENST00000585370 TMEM45BQ96B21 275 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 MAP6Q96JE9 813 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 C4orf45Q96LM5 186 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 CMTM3Q96MX0 182 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 UCN2Q96RP3 112 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 SMAD5Q99717 465 aaKnown RBP9.2□□□□□ -0.94
LIG3-203ENST00000585370 PDCD1LG2Q9BQ51 273 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 WACQ9BTA9 647 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 SRXN1Q9BYN0 137 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 TTTY10Q9BZA0 68 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 SEC61A2Q9H9S3 476 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 PARPBPQ9NWS1 579 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 EMC3Q9P0I2 261 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 MCTS1Q9ULC4 181 aaKnown RBP9.2□□□□□ -0.94
LIG3-203ENST00000585370 FLVCR1Q9Y5Y0 555 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 R4GMQ9 66 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 POLEQ07864 2286 aa9.2□□□□□ -0.94
LIG3-203ENST00000585370 IGKV3D-15A0A087WSY6 115 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 IGKV1D-43A0A0B4J1Z2 117 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 ZNF716A6NP11 495 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 NOTOA8MTQ0 251 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 PRR32B1ATL7 298 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 PSMD9O00233 223 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 LRRTM2O43300 516 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 APOC1P02654 83 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 ISG15P05161 165 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 CPN1P15169 458 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 SRMP19623 302 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 MSR1P21757 451 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 APEX1P27695 318 aaKnown RBP9.19□□□□□ -0.94
LIG3-203ENST00000585370 MAGEA5P43359 124 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 RANBP1P43487 201 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 STARP49675 285 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 MMP16P51512 607 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 CLDN18P56856 261 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 NANOS3P60323 173 aaKnown RBP9.19□□□□□ -0.94
LIG3-203ENST00000585370 MRPL49Q13405 166 aaKnown RBP9.19□□□□□ -0.94
LIG3-203ENST00000585370 EIF2S3LQ2VIR3 472 aaKnown RBP9.19□□□□□ -0.94
LIG3-203ENST00000585370 TMEM244Q5VVB8 128 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 CARD17Q5XLA6 110 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 LRRN1Q6UXK5 716 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 AAED1Q7RTV5 226 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.19□□□□□ -0.94
LIG3-203ENST00000585370 CATSPERDQ86XM0 798 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 UBQLNLQ8IYU4 475 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 PARP16Q8N5Y8 322 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 SSC4DQ8WTU2 575 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 ZNF385AQ96PM9 386 aaKnown RBP9.19□□□□□ -0.94
LIG3-203ENST00000585370 DCLRE1CQ96SD1 692 aaKnown RBP9.19□□□□□ -0.94
LIG3-203ENST00000585370 SH3GL3Q99963 347 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 CCDC32Q9BV29 185 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 HES7Q9BYE0 225 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 NELFAQ9H3P2 528 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 POLE4Q9NR33 117 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 ABRACLQ9P1F3 81 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 RABL2AQ9UBK7 228 aaPredicted RBP9.19□□□□□ -0.94
LIG3-203ENST00000585370 FOXD3Q9UJU5 478 aaPredicted RBP9.19□□□□□ -0.94
LIG3-203ENST00000585370 RABL2BQ9UNT1 228 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 POLR1DQ9Y2S0 133 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 LRP12Q9Y561 859 aa9.19□□□□□ -0.94
LIG3-203ENST00000585370 IGHV3-15A0A0B4J1V0 119 aa9.18□□□□□ -0.94
LIG3-203ENST00000585370 FAM166BA8MTA8 275 aa9.18□□□□□ -0.94
LIG3-203ENST00000585370 ZNF724A8MTY0 619 aa9.18□□□□□ -0.94
LIG3-203ENST00000585370 ZNF878C9JN71 531 aa9.18□□□□□ -0.94
LIG3-203ENST00000585370 J3QRK9 145 aa9.18□□□□□ -0.94
LIG3-203ENST00000585370 CD2P06729 351 aa9.18□□□□□ -0.94
LIG3-203ENST00000585370 CTSSP25774 331 aa9.18□□□□□ -0.94
LIG3-203ENST00000585370 RPS27P42677 84 aaKnown RBP9.18□□□□□ -0.94
LIG3-203ENST00000585370 GRB2P62993 217 aaKnown RBP9.18□□□□□ -0.94
LIG3-203ENST00000585370 MRPS34P82930 218 aaKnown RBP9.18□□□□□ -0.94
LIG3-203ENST00000585370 INSL4Q14641 139 aa9.18□□□□□ -0.94
LIG3-203ENST00000585370 RNPS1Q15287 305 aaKnown RBP9.18□□□□□ -0.94
LIG3-203ENST00000585370 TAF13Q15543 124 aa9.18□□□□□ -0.94
LIG3-203ENST00000585370 PLEKHN1Q494U1 663 aaPredicted RBP9.18□□□□□ -0.94
LIG3-203ENST00000585370 XKRXQ6PP77 449 aa9.18□□□□□ -0.94
LIG3-203ENST00000585370 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.18□□□□□ -0.94
LIG3-203ENST00000585370 WDFY1Q8IWB7 410 aa9.18□□□□□ -0.94
LIG3-203ENST00000585370 GPR137CQ8N3F9 429 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms