RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-222	ENST00000582792	THEM4	Q5T1C6	240 aa		11.46	□□□□□ -0.57
SS18-222	ENST00000582792	C1orf146	Q5VVC0	180 aa		11.46	□□□□□ -0.57
SS18-222	ENST00000582792	MBNL2	Q5VZF2	373 aa	Known RBP	11.46	□□□□□ -0.57
SS18-222	ENST00000582792	UNQ6126/PRO20091	Q6UXV3	157 aa		11.46	□□□□□ -0.57
SS18-222	ENST00000582792	HIST3H2A	Q7L7L0	130 aa		11.46	□□□□□ -0.57
SS18-222	ENST00000582792	C10orf67	Q8IYJ2	551 aa		11.46	□□□□□ -0.57
SS18-222	ENST00000582792	LINC00471	Q8N535	108 aa		11.46	□□□□□ -0.57
SS18-222	ENST00000582792	NOXO1	Q8NFA2	376 aa		11.46	□□□□□ -0.57
SS18-222	ENST00000582792	SLC7A13	Q8TCU3	470 aa		11.46	□□□□□ -0.57
SS18-222	ENST00000582792	CANT1	Q8WVQ1	401 aa		11.46	□□□□□ -0.57
SS18-222	ENST00000582792	HIST1H2AC	Q93077	130 aa		11.46	□□□□□ -0.57
SS18-222	ENST00000582792	SGTB	Q96EQ0	304 aa		11.46	□□□□□ -0.57
SS18-222	ENST00000582792	POM121L2	Q96KW2	1035 aa		11.46	□□□□□ -0.57
SS18-222	ENST00000582792	RAB3IP	Q96QF0	476 aa	Predicted RBP	11.46	□□□□□ -0.57
SS18-222	ENST00000582792	CHID1	Q9BWS9	393 aa		11.46	□□□□□ -0.57
SS18-222	ENST00000582792	MMP26	Q9NRE1	261 aa		11.46	□□□□□ -0.57
SS18-222	ENST00000582792	CYSLTR2	Q9NS75	346 aa		11.46	□□□□□ -0.57
SS18-222	ENST00000582792	RHCG	Q9UBD6	479 aa		11.46	□□□□□ -0.57
SS18-222	ENST00000582792	EIF3K	Q9UBQ5	218 aa	Known RBP	11.46	□□□□□ -0.57
SS18-222	ENST00000582792	CGGBP1	Q9UFW8	167 aa	Predicted RBP	11.46	□□□□□ -0.57
SS18-222	ENST00000582792	PURG	Q9UJV8	347 aa	Known RBP	11.46	□□□□□ -0.57
SS18-222	ENST00000582792	TMEM5	Q9Y2B1	443 aa		11.46	□□□□□ -0.57
SS18-222	ENST00000582792	POLR3K	Q9Y2Y1	108 aa	Predicted RBP	11.46	□□□□□ -0.57
SS18-222	ENST00000582792	POM121C	A8CG34	1229 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	KPNA4	O00629	521 aa	Predicted RBP	11.45	□□□□□ -0.58
SS18-222	ENST00000582792	OR7A10	O76100	309 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	GADD45G	O95257	159 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	IGHM	P01871	453 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	RNASE1	P07998	156 aa	Known RBP	11.45	□□□□□ -0.58
SS18-222	ENST00000582792	CD55	P08174	381 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	TSPAN19	P0C672	248 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	LIPA	P38571	399 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	SLC9A3	P48764	834 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	IL13RA1	P78552	427 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	MRPS34	P82930	218 aa	Known RBP	11.45	□□□□□ -0.58
SS18-222	ENST00000582792	SPIB	Q01892	262 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	BAMBI	Q13145	260 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	ZSCAN26	Q16670	478 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	C10orf128	Q5T292	105 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	ZNF730	Q6ZMV8	503 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	TMPRSS11F	Q6ZWK6	438 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	RRM2B	Q7LG56	351 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	NANOGNB	Q7Z5D8	188 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	C1orf174	Q8IYL3	243 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	SYT14	Q8NB59	555 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	SLC25A40	Q8TBP6	338 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	KLF14	Q8TD94	323 aa	Predicted RBP	11.45	□□□□□ -0.58
SS18-222	ENST00000582792	ZNF48	Q96MX3	618 aa	Predicted RBP	11.45	□□□□□ -0.58
SS18-222	ENST00000582792	DIRC2	Q96SL1	478 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	OR2J1	Q9GZK6	312 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	KCNN2	Q9H2S1	579 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	SIAE	Q9HAT2	523 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	CCNB1IP1	Q9NPC3	277 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	KRCC1	Q9NPI7	259 aa	Predicted RBP	11.45	□□□□□ -0.58
SS18-222	ENST00000582792	KLHL21	Q9UJP4	597 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	ZDHHC8	Q9ULC8	765 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	NPTN	Q9Y639	398 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	AUP1	Q9Y679	476 aa		11.45	□□□□□ -0.58
SS18-222	ENST00000582792	LOC100509620	A0A075B734	347 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	C5orf49	A4QMS7	147 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	MCIDAS	D6RGH6	385 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	BLOC1S5-TXNDC5	H3BN57	136 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	TRAPPC2L	H3BP13	241 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792		H3BSA7	217 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	TRMU	O75648	421 aa	Known RBP	11.44	□□□□□ -0.58
SS18-222	ENST00000582792	DIRAS1	O95057	198 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	IGHV2-70	P01814	119 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	ACADS	P16219	412 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	ZNF32	P17041	273 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	FUT1	P19526	365 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	RRM2	P31350	389 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	CDA	P32320	146 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	IFNGR2	P38484	337 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	ACTR3	P61158	418 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	ZNF154	Q13106	437 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	SPRN	Q5BIV9	151 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	OR2T5	Q6IEZ7	315 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	HDDC2	Q7Z4H3	204 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	BCL6B	Q8N143	479 aa	Predicted RBP	11.44	□□□□□ -0.58
SS18-222	ENST00000582792	OR2T29	Q8NH02	315 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	PFN4	Q8NHR9	129 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	ASB10	Q8WXI3	467 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	NABP1	Q96AH0	204 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	BPIFA2	Q96DR5	249 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	RSRC1	Q96IZ7	334 aa	Known RBP	11.44	□□□□□ -0.58
SS18-222	ENST00000582792	SLITRK2	Q9H156	845 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	PATZ1	Q9HBE1	687 aa	Known RBP	11.44	□□□□□ -0.58
SS18-222	ENST00000582792	ARMC1	Q9NVT9	282 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	TMCC3	Q9ULS5	477 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	AURKC	Q9UQB9	309 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	INSIG2	Q9Y5U4	225 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	LYVE1	Q9Y5Y7	322 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	NOTCH1	P46531	2555 aa		11.44	□□□□□ -0.58
SS18-222	ENST00000582792	CMYA5	Q8N3K9	4069 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	TRBV4-1	A0A0J9YWV2	114 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792		A0A1W2PRG6	482 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792		A8MXK9	166 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	CLDN34	H7C241	214 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	TNFRSF11B	O00300	401 aa		11.43	□□□□□ -0.58
SS18-222	ENST00000582792	ICMT	O60725	284 aa		11.43	□□□□□ -0.58

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