RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 OR1F12Q8NHA8 337 aa17.22■□□□□ 0.35
SS18-218ENST00000581021 SYNPRQ8TBG9 265 aa17.22■□□□□ 0.35
SS18-218ENST00000581021 SLC25A40Q8TBP6 338 aa17.22■□□□□ 0.35
SS18-218ENST00000581021 IPCEF1Q8WWN9 437 aaPredicted RBP17.22■□□□□ 0.35
SS18-218ENST00000581021 FAM168AQ92567 244 aa17.22■□□□□ 0.35
SS18-218ENST00000581021 OR2J1Q9GZK6 312 aa17.22■□□□□ 0.35
SS18-218ENST00000581021 NDRG4Q9ULP0 352 aaKnown RBP17.22■□□□□ 0.35
SS18-218ENST00000581021 BAIAP2Q9UQB8 552 aa17.22■□□□□ 0.35
SS18-218ENST00000581021 POLR1DQ9Y2S0 133 aa17.22■□□□□ 0.35
SS18-218ENST00000581021 C2CD3Q4AC94 2353 aa17.22■□□□□ 0.35
SS18-218ENST00000581021 NIPBLQ6KC79 2804 aaeCLIP17.21■□□□□ 0.35
SS18-218ENST00000581021 A0A1W2PPW3 197 aa17.21■□□□□ 0.35
SS18-218ENST00000581021 TVP23AA6NH52 213 aa17.21■□□□□ 0.35
SS18-218ENST00000581021 NCR1O76036 304 aa17.21■□□□□ 0.35
SS18-218ENST00000581021 RPS27P42677 84 aaKnown RBP17.21■□□□□ 0.35
SS18-218ENST00000581021 KLF3P57682 345 aaPredicted RBP17.21■□□□□ 0.35
SS18-218ENST00000581021 PPP1CBP62140 327 aa17.21■□□□□ 0.35
SS18-218ENST00000581021 ATP6AP1Q15904 470 aa17.21■□□□□ 0.35
SS18-218ENST00000581021 RSPO1Q2MKA7 263 aaPredicted RBP17.21■□□□□ 0.35
SS18-218ENST00000581021 ACSM5Q6NUN0 579 aa17.21■□□□□ 0.35
SS18-218ENST00000581021 FAHD1Q6P587 224 aa17.21■□□□□ 0.35
SS18-218ENST00000581021 PROKR2Q8NFJ6 384 aa17.21■□□□□ 0.35
SS18-218ENST00000581021 TEX47Q8TBZ9 253 aa17.21■□□□□ 0.35
SS18-218ENST00000581021 DUS3LQ96G46 650 aaKnown RBP17.21■□□□□ 0.35
SS18-218ENST00000581021 C4orf45Q96LM5 186 aa17.21■□□□□ 0.35
SS18-218ENST00000581021 RHNO1Q9BSD3 238 aa17.21■□□□□ 0.35
SS18-218ENST00000581021 RAB1BQ9H0U4 201 aa17.21■□□□□ 0.35
SS18-218ENST00000581021 MED20Q9H944 212 aa17.21■□□□□ 0.35
SS18-218ENST00000581021 PNRC2Q9NPJ4 139 aaKnown RBP17.21■□□□□ 0.35
SS18-218ENST00000581021 CMC2Q9NRP2 79 aa17.21■□□□□ 0.35
SS18-218ENST00000581021 TAAR3PQ9P1P4 343 aa17.21■□□□□ 0.35
SS18-218ENST00000581021 CYB5R1Q9UHQ9 305 aa17.21■□□□□ 0.35
SS18-218ENST00000581021 CHD3Q12873 2000 aaKnown RBP17.2■□□□□ 0.34
SS18-218ENST00000581021 VWC2LB2RUY7 222 aa17.2■□□□□ 0.34
SS18-218ENST00000581021 LYNX1G3V0Z9 82 aa17.2■□□□□ 0.34
SS18-218ENST00000581021 H3BN98 237 aa17.2■□□□□ 0.34
SS18-218ENST00000581021 DEAF1O75398 565 aaPredicted RBP17.2■□□□□ 0.34
SS18-218ENST00000581021 LYNX1P0DP58 116 aa17.2■□□□□ 0.34
SS18-218ENST00000581021 SPI1P17947 270 aa17.2■□□□□ 0.34
SS18-218ENST00000581021 SLC25A1P53007 311 aa17.2■□□□□ 0.34
SS18-218ENST00000581021 DSCR9P59020 149 aa17.2■□□□□ 0.34
SS18-218ENST00000581021 KRTAP27-1Q3LI81 207 aa17.2■□□□□ 0.34
SS18-218ENST00000581021 OR2T4Q8NH00 348 aa17.2■□□□□ 0.34
SS18-218ENST00000581021 KLF14Q8TD94 323 aaPredicted RBP17.2■□□□□ 0.34
SS18-218ENST00000581021 MAP6Q96JE9 813 aa17.2■□□□□ 0.34
SS18-218ENST00000581021 EIF3KQ9UBQ5 218 aaKnown RBP17.2■□□□□ 0.34
SS18-218ENST00000581021 KLHL21Q9UJP4 597 aa17.2■□□□□ 0.34
SS18-218ENST00000581021 COMMD3-BMI1R4GMX3 469 aa17.2■□□□□ 0.34
SS18-218ENST00000581021 FAM183AA6NL82 134 aa17.19■□□□□ 0.34
SS18-218ENST00000581021 ABHD16AO95870 558 aa17.19■□□□□ 0.34
SS18-218ENST00000581021 IGHV3-13P01766 116 aa17.19■□□□□ 0.34
SS18-218ENST00000581021 HPXP02790 462 aa17.19■□□□□ 0.34
SS18-218ENST00000581021 HEXAP06865 529 aa17.19■□□□□ 0.34
SS18-218ENST00000581021 OSMP13725 252 aa17.19■□□□□ 0.34
SS18-218ENST00000581021 DAOP14920 347 aa17.19■□□□□ 0.34
SS18-218ENST00000581021 POU1F1P28069 291 aa17.19■□□□□ 0.34
SS18-218ENST00000581021 GRK5P34947 590 aa17.19■□□□□ 0.34
SS18-218ENST00000581021 DAPP51397 102 aa17.19■□□□□ 0.34
SS18-218ENST00000581021 GINS1Q14691 196 aa17.19■□□□□ 0.34
SS18-218ENST00000581021 ELFN2Q5R3F8 820 aa17.19■□□□□ 0.34
SS18-218ENST00000581021 LINC01590Q5TEZ4 76 aa17.19■□□□□ 0.34
SS18-218ENST00000581021 MBNL2Q5VZF2 373 aaKnown RBP17.19■□□□□ 0.34
SS18-218ENST00000581021 CCDC121Q6ZUS5 278 aa17.19■□□□□ 0.34
SS18-218ENST00000581021 OR10S1Q8NGN2 331 aa17.19■□□□□ 0.34
SS18-218ENST00000581021 NEU4Q8WWR8 484 aaPredicted RBP17.19■□□□□ 0.34
SS18-218ENST00000581021 NRBF2Q96F24 287 aa17.19■□□□□ 0.34
SS18-218ENST00000581021 WDR76Q9H967 626 aa17.19■□□□□ 0.34
SS18-218ENST00000581021 ATPIF1Q9UII2 106 aa17.19■□□□□ 0.34
SS18-218ENST00000581021 FBXO9Q9UK97 447 aaPredicted RBP17.19■□□□□ 0.34
SS18-218ENST00000581021 NAV3Q8IVL0 2385 aa17.19■□□□□ 0.34
SS18-218ENST00000581021 RIIAD1A6NNX1 92 aa17.18■□□□□ 0.34
SS18-218ENST00000581021 HLA-DQA2P01906 255 aa17.18■□□□□ 0.34
SS18-218ENST00000581021 CSF3P09919 207 aa17.18■□□□□ 0.34
SS18-218ENST00000581021 ANXA8P13928 327 aa17.18■□□□□ 0.34
SS18-218ENST00000581021 ANOS1P23352 680 aa17.18■□□□□ 0.34
SS18-218ENST00000581021 MAGEB1P43366 347 aa17.18■□□□□ 0.34
SS18-218ENST00000581021 PDLIM4P50479 330 aa17.18■□□□□ 0.34
SS18-218ENST00000581021 CARTPTQ16568 116 aa17.18■□□□□ 0.34
SS18-218ENST00000581021 NKPD1Q17RQ9 610 aa17.18■□□□□ 0.34
SS18-218ENST00000581021 TMEM236Q5W0B7 351 aa17.18■□□□□ 0.34
SS18-218ENST00000581021 AMIGO2Q86SJ2 522 aa17.18■□□□□ 0.34
SS18-218ENST00000581021 ATG16L2Q8NAA4 619 aa17.18■□□□□ 0.34
SS18-218ENST00000581021 ZNF511Q8NB15 262 aa17.18■□□□□ 0.34
SS18-218ENST00000581021 GJC3Q8NFK1 279 aa17.18■□□□□ 0.34
SS18-218ENST00000581021 COQ7Q99807 217 aa17.18■□□□□ 0.34
SS18-218ENST00000581021 HDHD2Q9H0R4 259 aa17.18■□□□□ 0.34
SS18-218ENST00000581021 TBCCD1Q9NVR7 557 aa17.18■□□□□ 0.34
SS18-218ENST00000581021 STARD10Q9Y365 291 aa17.18■□□□□ 0.34
SS18-218ENST00000581021 GRIP1Q9Y3R0 1128 aa17.18■□□□□ 0.34
SS18-218ENST00000581021 AP4S1Q9Y587 144 aa17.18■□□□□ 0.34
SS18-218ENST00000581021 ABCA1O95477 2261 aa17.17■□□□□ 0.34
SS18-218ENST00000581021 ZSCAN5BA6NJL1 495 aa17.17■□□□□ 0.34
SS18-218ENST00000581021 MITFO75030 526 aaPredicted RBP17.17■□□□□ 0.34
SS18-218ENST00000581021 IFNGP01579 166 aa17.17■□□□□ 0.34
SS18-218ENST00000581021 SLC25A16P16260 332 aa17.17■□□□□ 0.34
SS18-218ENST00000581021 ZNF3P17036 446 aa17.17■□□□□ 0.34
SS18-218ENST00000581021 MMP15P51511 669 aa17.17■□□□□ 0.34
SS18-218ENST00000581021 SLC27A4Q6P1M0 643 aa17.17■□□□□ 0.34
SS18-218ENST00000581021 TMEM154Q6P9G4 183 aa17.17■□□□□ 0.34
SS18-218ENST00000581021 OR5K1Q8NHB7 308 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms