RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 MAP6Q96JE9 813 aa14.83□□□□□ -0.03
NUP88-210ENST00000574867 RADILQ96JH8 1075 aa14.83□□□□□ -0.03
NUP88-210ENST00000574867 COQ7Q99807 217 aa14.83□□□□□ -0.03
NUP88-210ENST00000574867 ATF6BQ99941 703 aa14.83□□□□□ -0.03
NUP88-210ENST00000574867 LAMP5Q9UJQ1 280 aa14.83□□□□□ -0.03
NUP88-210ENST00000574867 PCDHGB1Q9Y5G3 927 aa14.83□□□□□ -0.03
NUP88-210ENST00000574867 SIAH2O43255 324 aa14.83□□□□□ -0.04
NUP88-210ENST00000574867 CD3EP07766 207 aa14.83□□□□□ -0.04
NUP88-210ENST00000574867 STOMP27105 288 aa14.83□□□□□ -0.04
NUP88-210ENST00000574867 COL8A1P27658 744 aa14.83□□□□□ -0.04
NUP88-210ENST00000574867 APEX1P27695 318 aaKnown RBP14.83□□□□□ -0.04
NUP88-210ENST00000574867 ACTC1P68032 377 aa14.83□□□□□ -0.04
NUP88-210ENST00000574867 ACTA1P68133 377 aa14.83□□□□□ -0.04
NUP88-210ENST00000574867 RAB40BQ12829 278 aa14.83□□□□□ -0.04
NUP88-210ENST00000574867 SLC35F2Q8IXU6 374 aa14.83□□□□□ -0.04
NUP88-210ENST00000574867 PIK3IP1Q96FE7 263 aa14.83□□□□□ -0.04
NUP88-210ENST00000574867 ABHD6Q9BV23 337 aa14.83□□□□□ -0.04
NUP88-210ENST00000574867 PNRC2Q9NPJ4 139 aaKnown RBP14.83□□□□□ -0.04
NUP88-210ENST00000574867 DDX28Q9NUL7 540 aaKnown RBP14.83□□□□□ -0.04
NUP88-210ENST00000574867 IRGMA1A4Y4 181 aa14.82□□□□□ -0.04
NUP88-210ENST00000574867 ZNF878C9JN71 531 aa14.82□□□□□ -0.04
NUP88-210ENST00000574867 ABCD4O14678 606 aa14.82□□□□□ -0.04
NUP88-210ENST00000574867 ALOX5APP20292 161 aa14.82□□□□□ -0.04
NUP88-210ENST00000574867 GDI2P50395 445 aaKnown RBP14.82□□□□□ -0.04
NUP88-210ENST00000574867 SMN1Q16637 294 aaKnown RBP14.82□□□□□ -0.04
NUP88-210ENST00000574867 KRT80Q6KB66 452 aa14.82□□□□□ -0.04
NUP88-210ENST00000574867 TMEM154Q6P9G4 183 aa14.82□□□□□ -0.04
NUP88-210ENST00000574867 RNF133Q8WVZ7 376 aa14.82□□□□□ -0.04
NUP88-210ENST00000574867 IPCEF1Q8WWN9 437 aaPredicted RBP14.82□□□□□ -0.04
NUP88-210ENST00000574867 ASB17Q8WXJ9 295 aa14.82□□□□□ -0.04
NUP88-210ENST00000574867 SLAMF6Q96DU3 332 aa14.82□□□□□ -0.04
NUP88-210ENST00000574867 POM121L2Q96KW2 1035 aa14.82□□□□□ -0.04
NUP88-210ENST00000574867 CNBD2Q96M20 576 aa14.82□□□□□ -0.04
NUP88-210ENST00000574867 MRPS18AQ9NVS2 196 aaKnown RBP14.82□□□□□ -0.04
NUP88-210ENST00000574867 RNF115Q9Y4L5 304 aa14.82□□□□□ -0.04
NUP88-210ENST00000574867 PKDREJQ9NTG1 2253 aa14.82□□□□□ -0.04
NUP88-210ENST00000574867 IGHV2OR16-5A0A0B4J2B6 119 aa14.81□□□□□ -0.04
NUP88-210ENST00000574867 DENRO43583 198 aaKnown RBP14.81□□□□□ -0.04
NUP88-210ENST00000574867 OR2T7P0C7T2 308 aa14.81□□□□□ -0.04
NUP88-210ENST00000574867 LOXP28300 417 aaPredicted RBP14.81□□□□□ -0.04
NUP88-210ENST00000574867 CSNK2BP67870 215 aa14.81□□□□□ -0.04
NUP88-210ENST00000574867 KLHL22Q53GT1 634 aa14.81□□□□□ -0.04
NUP88-210ENST00000574867 OR10S1Q8NGN2 331 aa14.81□□□□□ -0.04
NUP88-210ENST00000574867 OR2T27Q8NH04 317 aa14.81□□□□□ -0.04
NUP88-210ENST00000574867 LGALS12Q96DT0 336 aa14.81□□□□□ -0.04
NUP88-210ENST00000574867 C14orf79Q96F83 325 aa14.81□□□□□ -0.04
NUP88-210ENST00000574867 CDH20Q9HBT6 801 aa14.81□□□□□ -0.04
NUP88-210ENST00000574867 AMBNQ9NP70 447 aa14.81□□□□□ -0.04
NUP88-210ENST00000574867 EXOGQ9Y2C4 368 aaKnown RBP14.81□□□□□ -0.04
NUP88-210ENST00000574867 FAM221AA4D161 298 aa14.81□□□□□ -0.04
NUP88-210ENST00000574867 ZNF670-ZNF695F2Z2N8 137 aa14.81□□□□□ -0.04
NUP88-210ENST00000574867 FADS2O95864 444 aaKnown RBP14.81□□□□□ -0.04
NUP88-210ENST00000574867 SLC15A1P46059 708 aa14.81□□□□□ -0.04
NUP88-210ENST00000574867 CXCR4P61073 352 aa14.81□□□□□ -0.04
NUP88-210ENST00000574867 KCTD18Q6PI47 426 aaPredicted RBP14.81□□□□□ -0.04
NUP88-210ENST00000574867 PIAS4Q8N2W9 510 aaPredicted RBP14.81□□□□□ -0.04
NUP88-210ENST00000574867 OR4F15Q8NGB8 312 aa14.81□□□□□ -0.04
NUP88-210ENST00000574867 THEM6Q8WUY1 208 aa14.81□□□□□ -0.04
NUP88-210ENST00000574867 DCLRE1CQ96SD1 692 aaKnown RBP14.81□□□□□ -0.04
NUP88-210ENST00000574867 TMEM204Q9BSN7 226 aa14.81□□□□□ -0.04
NUP88-210ENST00000574867 PLCXD1Q9NUJ7 323 aa14.81□□□□□ -0.04
NUP88-210ENST00000574867 APOL3O95236 402 aa14.8□□□□□ -0.04
NUP88-210ENST00000574867 ZNF35P13682 527 aa14.8□□□□□ -0.04
NUP88-210ENST00000574867 GRB2P62993 217 aaKnown RBP14.8□□□□□ -0.04
NUP88-210ENST00000574867 OR10H4Q8NGA5 316 aa14.8□□□□□ -0.04
NUP88-210ENST00000574867 SMAP2Q8WU79 429 aaPredicted RBP14.8□□□□□ -0.04
NUP88-210ENST00000574867 SPTSSAQ969W0 71 aa14.8□□□□□ -0.04
NUP88-210ENST00000574867 COPS4Q9BT78 406 aa14.8□□□□□ -0.04
NUP88-210ENST00000574867 KLHDC2Q9Y2U9 406 aa14.8□□□□□ -0.04
NUP88-210ENST00000574867 UTP20O75691 2785 aaKnown RBP14.8□□□□□ -0.04
NUP88-210ENST00000574867 LOC100509620A0A075B734 347 aa14.8□□□□□ -0.04
NUP88-210ENST00000574867 C5orf49A4QMS7 147 aa14.8□□□□□ -0.04
NUP88-210ENST00000574867 J3QRE1 110 aa14.8□□□□□ -0.04
NUP88-210ENST00000574867 GALK2Q01415 458 aa14.8□□□□□ -0.04
NUP88-210ENST00000574867 SPOCK1Q08629 439 aa14.8□□□□□ -0.04
NUP88-210ENST00000574867 C6orf141Q5SZD1 244 aa14.8□□□□□ -0.04
NUP88-210ENST00000574867 LAIR2Q6ISS4 152 aa14.8□□□□□ -0.04
NUP88-210ENST00000574867 ARL9Q6T311 187 aa14.8□□□□□ -0.04
NUP88-210ENST00000574867 SLC22A25Q6T423 547 aa14.8□□□□□ -0.04
NUP88-210ENST00000574867 AMELYQ99218 206 aa14.8□□□□□ -0.04
NUP88-210ENST00000574867 CENPMQ9NSP4 180 aa14.8□□□□□ -0.04
NUP88-210ENST00000574867 CNOT2Q9NZN8 540 aaKnown RBP14.8□□□□□ -0.04
NUP88-210ENST00000574867 COPS3Q9UNS2 423 aa14.8□□□□□ -0.04
NUP88-210ENST00000574867 SPEF1Q9Y4P9 236 aa14.8□□□□□ -0.04
NUP88-210ENST00000574867 ATP6V1G2-DDX39BF2Z307 99 aa14.79□□□□□ -0.04
NUP88-210ENST00000574867 ICMTO60725 284 aa14.79□□□□□ -0.04
NUP88-210ENST00000574867 PIPP12273 146 aaPredicted RBP14.79□□□□□ -0.04
NUP88-210ENST00000574867 PCSK6P29122 969 aa14.79□□□□□ -0.04
NUP88-210ENST00000574867 CALCRP30988 508 aa14.79□□□□□ -0.04
NUP88-210ENST00000574867 OPRL1P41146 370 aa14.79□□□□□ -0.04
NUP88-210ENST00000574867 HCCSP53701 268 aa14.79□□□□□ -0.04
NUP88-210ENST00000574867 ROM1Q03395 351 aa14.79□□□□□ -0.04
NUP88-210ENST00000574867 TAF13Q15543 124 aa14.79□□□□□ -0.04
NUP88-210ENST00000574867 KRTAP27-1Q3LI81 207 aa14.79□□□□□ -0.04
NUP88-210ENST00000574867 ADAM5Q6NVV9 412 aa14.79□□□□□ -0.04
NUP88-210ENST00000574867 DEGS2Q6QHC5 323 aa14.79□□□□□ -0.04
NUP88-210ENST00000574867 UNQ6126/PRO20091Q6UXV3 157 aa14.79□□□□□ -0.04
NUP88-210ENST00000574867 ACBD7Q8N6N7 88 aa14.79□□□□□ -0.04
NUP88-210ENST00000574867 MARVELD3Q96A59 401 aa14.79□□□□□ -0.04
NUP88-210ENST00000574867 HS3ST6Q96QI5 342 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 113.9 ms