RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 RAC2P15153 192 aa14.78□□□□□ -0.04
CLK3-227ENST00000570296 GATA4P43694 442 aa14.78□□□□□ -0.04
CLK3-227ENST00000570296 ERFP50548 548 aa14.78□□□□□ -0.04
CLK3-227ENST00000570296 PCBD1P61457 104 aa14.78□□□□□ -0.04
CLK3-227ENST00000570296 Q8TCH9 128 aa14.78□□□□□ -0.04
CLK3-227ENST00000570296 H3BUX3 64 aa14.77□□□□□ -0.05
CLK3-227ENST00000570296 SLC2A10O95528 541 aa14.77□□□□□ -0.05
CLK3-227ENST00000570296 CST2P09228 141 aa14.77□□□□□ -0.05
CLK3-227ENST00000570296 OR1Q1Q15612 314 aa14.77□□□□□ -0.05
CLK3-227ENST00000570296 ZNF74Q16587 644 aa14.77□□□□□ -0.05
CLK3-227ENST00000570296 RNF144BQ7Z419 303 aa14.77□□□□□ -0.05
CLK3-227ENST00000570296 OR5AS1Q8N127 324 aa14.77□□□□□ -0.05
CLK3-227ENST00000570296 OR8G5Q8NG78 346 aa14.77□□□□□ -0.05
CLK3-227ENST00000570296 BBS10Q8TAM1 723 aa14.77□□□□□ -0.05
CLK3-227ENST00000570296 ERGIC1Q969X5 290 aa14.77□□□□□ -0.05
CLK3-227ENST00000570296 OR52E6Q96RD3 313 aa14.77□□□□□ -0.05
CLK3-227ENST00000570296 NUF2Q9BZD4 464 aa14.77□□□□□ -0.05
CLK3-227ENST00000570296 NPFFR1Q9GZQ6 430 aa14.77□□□□□ -0.05
CLK3-227ENST00000570296 PCDHAC1Q9H158 963 aa14.77□□□□□ -0.05
CLK3-227ENST00000570296 SMURF1Q9HCE7 757 aa14.77□□□□□ -0.05
CLK3-227ENST00000570296 SLCO1B3Q9NPD5 702 aa14.77□□□□□ -0.05
CLK3-227ENST00000570296 NANSQ9NR45 359 aa14.77□□□□□ -0.05
CLK3-227ENST00000570296 STARD10Q9Y365 291 aa14.77□□□□□ -0.05
CLK3-227ENST00000570296 IGHV3-64DA0A0J9YX35 117 aa14.76□□□□□ -0.05
CLK3-227ENST00000570296 ELOVL7A1L3X0 281 aa14.76□□□□□ -0.05
CLK3-227ENST00000570296 GMNCA6NCL1 334 aa14.76□□□□□ -0.05
CLK3-227ENST00000570296 MCIDASD6RGH6 385 aa14.76□□□□□ -0.05
CLK3-227ENST00000570296 F5H5P2 479 aa14.76□□□□□ -0.05
CLK3-227ENST00000570296 FBP2O00757 339 aa14.76□□□□□ -0.05
CLK3-227ENST00000570296 OR10H3O60404 316 aa14.76□□□□□ -0.05
CLK3-227ENST00000570296 TRMUO75648 421 aaKnown RBP14.76□□□□□ -0.05
CLK3-227ENST00000570296 COX5BP10606 129 aa14.76□□□□□ -0.05
CLK3-227ENST00000570296 ACADSP16219 412 aa14.76□□□□□ -0.05
CLK3-227ENST00000570296 FAHP16930 419 aa14.76□□□□□ -0.05
CLK3-227ENST00000570296 RPL4P36578 427 aaKnown RBP14.76□□□□□ -0.05
CLK3-227ENST00000570296 CDH12P55289 794 aa14.76□□□□□ -0.05
CLK3-227ENST00000570296 BTN2A1Q7KYR7 527 aa14.76□□□□□ -0.05
CLK3-227ENST00000570296 COMTD1Q86VU5 262 aa14.76□□□□□ -0.05
CLK3-227ENST00000570296 C19orf18Q8NEA5 215 aa14.76□□□□□ -0.05
CLK3-227ENST00000570296 OR11L1Q8NGX0 322 aa14.76□□□□□ -0.05
CLK3-227ENST00000570296 WIPF2Q8TF74 440 aaPredicted RBP14.76□□□□□ -0.05
CLK3-227ENST00000570296 GAR1Q9NY12 217 aaKnown RBP14.76□□□□□ -0.05
CLK3-227ENST00000570296 STX18Q9P2W9 335 aaKnown RBP14.76□□□□□ -0.05
CLK3-227ENST00000570296 NKX1-2Q9UD57 310 aaPredicted RBP14.76□□□□□ -0.05
CLK3-227ENST00000570296 A0A1W2PRG6 482 aa14.75□□□□□ -0.05
CLK3-227ENST00000570296 RFXANKO14593 260 aa14.75□□□□□ -0.05
CLK3-227ENST00000570296 MLNRO43193 412 aa14.75□□□□□ -0.05
CLK3-227ENST00000570296 ADAM20O43506 726 aa14.75□□□□□ -0.05
CLK3-227ENST00000570296 NDUFA2O43678 99 aa14.75□□□□□ -0.05
CLK3-227ENST00000570296 CH25HO95992 272 aa14.75□□□□□ -0.05
CLK3-227ENST00000570296 ETS2P15036 469 aa14.75□□□□□ -0.05
CLK3-227ENST00000570296 KRT4P19013 534 aa14.75□□□□□ -0.05
CLK3-227ENST00000570296 DMRTC1Q5HYR2 192 aa14.75□□□□□ -0.05
CLK3-227ENST00000570296 DHRS4L2Q6PKH6 230 aa14.75□□□□□ -0.05
CLK3-227ENST00000570296 LINC00114Q6XXX2 140 aa14.75□□□□□ -0.05
CLK3-227ENST00000570296 BEND2Q8NDZ0 799 aa14.75□□□□□ -0.05
CLK3-227ENST00000570296 ASB10Q8WXI3 467 aa14.75□□□□□ -0.05
CLK3-227ENST00000570296 NMD3Q96D46 503 aaKnown RBP14.75□□□□□ -0.05
CLK3-227ENST00000570296 FAM234AQ9H0X4 552 aa14.75□□□□□ -0.05
CLK3-227ENST00000570296 TRIM36Q9NQ86 728 aa14.75□□□□□ -0.05
CLK3-227ENST00000570296 RPUSD1Q9UJJ7 312 aaKnown RBP14.75□□□□□ -0.05
CLK3-227ENST00000570296 ZNF229Q9UJW7 825 aa14.75□□□□□ -0.05
CLK3-227ENST00000570296 CSMD3Q7Z407 3707 aa14.75□□□□□ -0.05
CLK3-227ENST00000570296 HERC2O95714 4834 aa14.75□□□□□ -0.05
CLK3-227ENST00000570296 ZFPL1O95159 310 aa14.74□□□□□ -0.05
CLK3-227ENST00000570296 HIST1H2ABP04908 130 aa14.74□□□□□ -0.05
CLK3-227ENST00000570296 NR2C1P13056 603 aa14.74□□□□□ -0.05
CLK3-227ENST00000570296 LAP3P28838 519 aa14.74□□□□□ -0.05
CLK3-227ENST00000570296 SAA4P35542 130 aa14.74□□□□□ -0.05
CLK3-227ENST00000570296 DAP3P51398 398 aaKnown RBP14.74□□□□□ -0.05
CLK3-227ENST00000570296 RGS8P57771 180 aaPredicted RBP14.74□□□□□ -0.05
CLK3-227ENST00000570296 WHAMMP3Q1A5X7 153 aa14.74□□□□□ -0.05
CLK3-227ENST00000570296 CRIP3Q6Q6R5 217 aa14.74□□□□□ -0.05
CLK3-227ENST00000570296 HIST3H2AQ7L7L0 130 aa14.74□□□□□ -0.05
CLK3-227ENST00000570296 SYT9Q86SS6 491 aa14.74□□□□□ -0.05
CLK3-227ENST00000570296 CELF2-AS1Q8N7Q2 184 aa14.74□□□□□ -0.05
CLK3-227ENST00000570296 NSMAFQ92636 917 aa14.74□□□□□ -0.05
CLK3-227ENST00000570296 DPF1Q92782 380 aa14.74□□□□□ -0.05
CLK3-227ENST00000570296 HIST1H2ACQ93077 130 aa14.74□□□□□ -0.05
CLK3-227ENST00000570296 DMRTB1Q96MA1 342 aa14.74□□□□□ -0.05
CLK3-227ENST00000570296 ZNF582Q96NG8 517 aaPredicted RBP14.74□□□□□ -0.05
CLK3-227ENST00000570296 GPR61Q9BZJ8 451 aa14.74□□□□□ -0.05
CLK3-227ENST00000570296 TPT1P8Q9HAU6 139 aa14.74□□□□□ -0.05
CLK3-227ENST00000570296 SERTAD4Q9NUC0 356 aa14.74□□□□□ -0.05
CLK3-227ENST00000570296 IGKV1D-43A0A0B4J1Z2 117 aa14.73□□□□□ -0.05
CLK3-227ENST00000570296 A0A1B0GWJ7 208 aa14.73□□□□□ -0.05
CLK3-227ENST00000570296 MEIOCA2RUB1 952 aa14.73□□□□□ -0.05
CLK3-227ENST00000570296 LGALS8O00214 317 aa14.73□□□□□ -0.05
CLK3-227ENST00000570296 ASAH2BP0C7U1 165 aa14.73□□□□□ -0.05
CLK3-227ENST00000570296 LMO1P25800 156 aa14.73□□□□□ -0.05
CLK3-227ENST00000570296 HOXD3P31249 432 aaPredicted RBP14.73□□□□□ -0.05
CLK3-227ENST00000570296 CLEC12AQ5QGZ9 265 aa14.73□□□□□ -0.05
CLK3-227ENST00000570296 NXNQ6DKJ4 435 aa14.73□□□□□ -0.05
CLK3-227ENST00000570296 FBXW12Q6X9E4 464 aa14.73□□□□□ -0.05
CLK3-227ENST00000570296 LIAT1Q6ZQX7 453 aa14.73□□□□□ -0.05
CLK3-227ENST00000570296 NANOGNBQ7Z5D8 188 aa14.73□□□□□ -0.05
CLK3-227ENST00000570296 CMTM4Q8IZR5 234 aa14.73□□□□□ -0.05
CLK3-227ENST00000570296 C4orf33Q8N1A6 199 aa14.73□□□□□ -0.05
CLK3-227ENST00000570296 CLDN22Q8N7P3 220 aa14.73□□□□□ -0.05
CLK3-227ENST00000570296 MNS1Q8NEH6 495 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms