RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 ZNF169Q14929 603 aaPredicted RBP7.06□□□□□ -1.28
VPS39-213ENST00000570062 EIF2S3LQ2VIR3 472 aaKnown RBP7.06□□□□□ -1.28
VPS39-213ENST00000570062 KRTCAP3Q53RY4 240 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 C1QTNF12Q5T7M4 302 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 FAM27BQ5VT28 67 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 OR2A2Q6IF42 318 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 LRRN1Q6UXK5 716 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 C8orf86Q6ZUL3 223 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 SSX6Q7RTT6 188 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 DCXRQ7Z4W1 244 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 UBQLNLQ8IYU4 475 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 TMEM123Q8N131 208 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 OR2G2Q8NGZ5 317 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 SPTSSAQ969W0 71 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 DNAJA3Q96EY1 480 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 EMC6Q9BV81 110 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 SRXN1Q9BYN0 137 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 C6orf62Q9GZU0 229 aaPredicted RBP7.06□□□□□ -1.28
VPS39-213ENST00000570062 ZCCHC4Q9H5U6 513 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 CCDC86Q9H6F5 360 aaKnown RBP7.06□□□□□ -1.28
VPS39-213ENST00000570062 NEK6Q9HC98 313 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 TCF7L1Q9HCS4 588 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 ATPIF1Q9UII2 106 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 ZNF391Q9UJN7 358 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 FOXD3Q9UJU5 478 aaPredicted RBP7.06□□□□□ -1.28
VPS39-213ENST00000570062 KNTC1P50748 2209 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 TMEM269A0A1B0GVZ9 245 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 NOTOA8MTQ0 251 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 E9PI62 339 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 RPL36A-HNRNPH2H7BZ11 118 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 LRRTM2O43300 516 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 TPPPO94811 219 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 F10P00742 488 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 CST2P09228 141 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 INHBBP09529 407 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 GABRA1P14867 456 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 SRMP19623 302 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 RAB3BP20337 219 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 ACHEP22303 614 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 CALRP27797 417 aaKnown RBP7.05□□□□□ -1.28
VPS39-213ENST00000570062 TALDO1P37837 337 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 CD79BP40259 229 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 OPRL1P41146 370 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 STARP49675 285 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 C19orf57Q0VDD7 668 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 ETFDHQ16134 617 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 ATP1A1-AS1Q5TC04 95 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 C16orf87Q6PH81 154 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 LRFN4Q6PJG9 635 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 TMEM91Q6ZNR0 172 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 Q6ZS92 163 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 CCDC36Q8IYA8 594 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 ZFP41Q8N8Y5 198 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 ZIC4Q8N9L1 334 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 MINDY2Q8NBR6 621 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 ST7LQ8TDW4 575 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 C15orf40Q8WUR7 153 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 FOXRED1Q96CU9 486 aaPredicted RBP7.05□□□□□ -1.28
VPS39-213ENST00000570062 C10orf35Q96D05 121 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 SLAMF6Q96DU3 332 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 POM121Q96HA1 1249 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 C4orf45Q96LM5 186 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 ZNF385AQ96PM9 386 aaKnown RBP7.05□□□□□ -1.28
VPS39-213ENST00000570062 UCN2Q96RP3 112 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 CCDC32Q9BV29 185 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 SCNM1Q9BWG6 230 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 RBM24Q9BX46 236 aaKnown RBP7.05□□□□□ -1.28
VPS39-213ENST00000570062 PRDM14Q9GZV8 571 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 HDHD2Q9H0R4 259 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 SLCO5A1Q9H2Y9 848 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 SLCO1C1Q9NYB5 712 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 FRRS1LQ9P0K9 344 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 HHLA2Q9UM44 414 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 FOXJ3Q9UPW0 622 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 CMAHPQ9Y471 501 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 UGT2A1Q9Y4X1 527 aa7.05□□□□□ -1.28
VPS39-213ENST00000570062 TRBV5-5A0A0J9YX44 114 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 KRTAP9-6A0A140TA67 174 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 CD8B2A6NJW9 211 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 SLC22A20A6NK97 555 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 OR4C45A6NMZ5 311 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 ZNF814B7Z6K7 855 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 ZNF587BE7ETH6 402 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 RGS5O15539 181 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 RPP14O95059 124 aaKnown RBP7.04□□□□□ -1.28
VPS39-213ENST00000570062 ZFPL1O95159 310 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 ERCC1P07992 297 aaPredicted RBP7.04□□□□□ -1.28
VPS39-213ENST00000570062 OCM2P0CE71 109 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 APEX1P27695 318 aaKnown RBP7.04□□□□□ -1.28
VPS39-213ENST00000570062 TMPRSS3P57727 454 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 PSMA6P60900 246 aaKnown RBP7.04□□□□□ -1.28
VPS39-213ENST00000570062 HIST1H3AP68431 136 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 TGFBR3Q03167 851 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 FMODQ06828 376 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 HNRNPA0Q13151 305 aaKnown RBP7.04□□□□□ -1.28
VPS39-213ENST00000570062 FAM189A2Q15884 450 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 SGCAQ16586 387 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 ZNF181Q2M3W8 571 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 BCL2L15Q5TBC7 163 aa7.04□□□□□ -1.28
VPS39-213ENST00000570062 HIST2H3PS2Q5TEC6 136 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms