RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 SBK2P0C263 348 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 PPIAL4FP0DN26 164 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 TNFRSF1AP19438 455 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 TNFSF4P23510 183 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 ZFP36P26651 326 aaKnown RBP13.57□□□□□ -0.24
CLN3-229ENST00000567963 RBMXP38159 391 aaKnown RBP13.57□□□□□ -0.24
CLN3-229ENST00000567963 LIMS1P48059 325 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 COMPP49747 757 aaPredicted RBP13.57□□□□□ -0.24
CLN3-229ENST00000567963 LSM6P62312 80 aaKnown RBP13.57□□□□□ -0.24
CLN3-229ENST00000567963 ACTG1P63261 375 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 KRR1Q13601 381 aaKnown RBP13.57□□□□□ -0.24
CLN3-229ENST00000567963 OTPQ5XKR4 325 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 GPR139Q6DWJ6 353 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 GLB1L2Q8IW92 636 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 ZNF283Q8N7M2 679 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 OR2Z1Q8NG97 314 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 SLC7A6Q92536 515 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 PTP4A1Q93096 173 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 RASD2Q96D21 266 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 HAVCR1Q96D42 359 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 COG8Q96MW5 612 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 DCLRE1CQ96SD1 692 aaKnown RBP13.57□□□□□ -0.24
CLN3-229ENST00000567963 GPX7Q96SL4 187 aaPredicted RBP13.57□□□□□ -0.24
CLN3-229ENST00000567963 KCTD14Q9BQ13 255 aaPredicted RBP13.57□□□□□ -0.24
CLN3-229ENST00000567963 SYT4Q9H2B2 425 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 VSX1Q9NZR4 365 aaPredicted RBP13.57□□□□□ -0.24
CLN3-229ENST00000567963 NDUFAF4Q9P032 175 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 ABCD2Q9UBJ2 740 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 IL19Q9UHD0 177 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 EGFL7Q9UHF1 273 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 RPS6KA6Q9UK32 745 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 COA3Q9Y2R0 106 aaPredicted RBP13.57□□□□□ -0.24
CLN3-229ENST00000567963 TMEM89A2RUT3 159 aa13.56□□□□□ -0.24
CLN3-229ENST00000567963 IMPA2O14732 288 aa13.56□□□□□ -0.24
CLN3-229ENST00000567963 KHDRBS3O75525 346 aaKnown RBP13.56□□□□□ -0.24
CLN3-229ENST00000567963 FOXH1O75593 365 aa13.56□□□□□ -0.24
CLN3-229ENST00000567963 RHCEP18577 417 aa13.56□□□□□ -0.24
CLN3-229ENST00000567963 OMPP47874 163 aa13.56□□□□□ -0.24
CLN3-229ENST00000567963 NUDT2P50583 147 aa13.56□□□□□ -0.24
CLN3-229ENST00000567963 FXYD6P3P58550 94 aa13.56□□□□□ -0.24
CLN3-229ENST00000567963 CCDC92Q53HC0 331 aaPredicted RBP13.56□□□□□ -0.24
CLN3-229ENST00000567963 SLC6A7Q99884 636 aa13.56□□□□□ -0.24
CLN3-229ENST00000567963 SUCNR1Q9BXA5 334 aa13.56□□□□□ -0.24
CLN3-229ENST00000567963 RERGLQ9H628 205 aa13.56□□□□□ -0.24
CLN3-229ENST00000567963 ASH2LQ9UBL3 628 aa13.56□□□□□ -0.24
CLN3-229ENST00000567963 IL20RAQ9UHF4 553 aa13.56□□□□□ -0.24
CLN3-229ENST00000567963 FAM32AQ9Y421 112 aaKnown RBP13.56□□□□□ -0.24
CLN3-229ENST00000567963 OR6C6A6NF89 314 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 FSHBP01225 129 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 MDH1P40925 334 aaKnown RBP13.55□□□□□ -0.24
CLN3-229ENST00000567963 GLYATQ6IB77 296 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 C1orf94Q6P1W5 598 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 PTCHD4Q6ZW05 846 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 LRRC28Q86X40 367 aaPredicted RBP13.55□□□□□ -0.24
CLN3-229ENST00000567963 KLHL36Q8N4N3 616 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 OR1F12Q8NHA8 337 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 GCDHQ92947 438 aaPredicted RBP13.55□□□□□ -0.24
CLN3-229ENST00000567963 C7orf34Q96L11 122 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 RBM4Q9BWF3 364 aaKnown RBP13.55□□□□□ -0.24
CLN3-229ENST00000567963 NUAK2Q9H093 628 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 PPP1R3CQ9UQK1 317 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 POLR3KQ9Y2Y1 108 aaPredicted RBP13.55□□□□□ -0.24
CLN3-229ENST00000567963 IER3IP1Q9Y5U9 82 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 SOCS2O14508 198 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 RER1O15258 196 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 TXNDC12O95881 172 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 RAC2P15153 192 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 CDKN2AP42771 156 aaKnown RBP13.55□□□□□ -0.24
CLN3-229ENST00000567963 ERFP50548 548 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 SEC23BQ15437 767 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 KCNMB1Q16558 191 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 TMEM155Q4W5P6 130 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 FGD3Q5JSP0 725 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 DPY19L2P2Q6ZN68 376 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 ADCK1Q86TW2 530 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 BPIFB2Q8N4F0 458 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 SPICQ8N5J4 248 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 ITLN1Q8WWA0 313 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 RSRC1Q96IZ7 334 aaKnown RBP13.55□□□□□ -0.24
CLN3-229ENST00000567963 SIGLEC11Q96RL6 698 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 PATZ1Q9HBE1 687 aaKnown RBP13.55□□□□□ -0.24
CLN3-229ENST00000567963 MMP26Q9NRE1 261 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 DCAF13Q9NV06 445 aaKnown RBP13.55□□□□□ -0.24
CLN3-229ENST00000567963 FAM53CQ9NYF3 392 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 ATPIF1Q9UII2 106 aa13.55□□□□□ -0.24
CLN3-229ENST00000567963 TRBV4-1A0A0J9YWV2 114 aa13.54□□□□□ -0.24
CLN3-229ENST00000567963 TRAPPC2LH3BP13 241 aa13.54□□□□□ -0.24
CLN3-229ENST00000567963 J3QW42 95 aa13.54□□□□□ -0.24
CLN3-229ENST00000567963 SURF4O15260 269 aa13.54□□□□□ -0.24
CLN3-229ENST00000567963 DBHP09172 617 aa13.54□□□□□ -0.24
CLN3-229ENST00000567963 FPR2P25090 351 aa13.54□□□□□ -0.24
CLN3-229ENST00000567963 SLC6A9P48067 706 aa13.54□□□□□ -0.24
CLN3-229ENST00000567963 RGS6P49758 472 aa13.54□□□□□ -0.24
CLN3-229ENST00000567963 RPS6KA3P51812 740 aa13.54□□□□□ -0.24
CLN3-229ENST00000567963 PSME3P61289 254 aa13.54□□□□□ -0.24
CLN3-229ENST00000567963 BTG1P62324 171 aa13.54□□□□□ -0.24
CLN3-229ENST00000567963 HLXQ14774 488 aaPredicted RBP13.54□□□□□ -0.24
CLN3-229ENST00000567963 ZMYND11Q15326 602 aa13.54□□□□□ -0.24
CLN3-229ENST00000567963 HSP90B2PQ58FF3 399 aa13.54□□□□□ -0.24
CLN3-229ENST00000567963 ZDHHC22Q8N966 263 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms