RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 DCTN6O00399 190 aa11.48□□□□□ -0.57
CLK3-216ENST00000564468 DEAF1O75398 565 aaPredicted RBP11.48□□□□□ -0.57
CLK3-216ENST00000564468 LY6HO94772 140 aa11.48□□□□□ -0.57
CLK3-216ENST00000564468 MPZL1O95297 269 aa11.48□□□□□ -0.57
CLK3-216ENST00000564468 IGHV3-13P01766 116 aa11.48□□□□□ -0.57
CLK3-216ENST00000564468 GAAP10253 952 aa11.48□□□□□ -0.57
CLK3-216ENST00000564468 ANXA8P13928 327 aa11.48□□□□□ -0.57
CLK3-216ENST00000564468 USF1P22415 310 aaPredicted RBP11.48□□□□□ -0.57
CLK3-216ENST00000564468 LIPAP38571 399 aa11.48□□□□□ -0.57
CLK3-216ENST00000564468 WNT5AP41221 380 aa11.48□□□□□ -0.57
CLK3-216ENST00000564468 ALDH3B1P43353 468 aa11.48□□□□□ -0.57
CLK3-216ENST00000564468 RGS6P49758 472 aa11.48□□□□□ -0.57
CLK3-216ENST00000564468 PPP1CBP62140 327 aa11.48□□□□□ -0.57
CLK3-216ENST00000564468 TEKQ02763 1124 aa11.48□□□□□ -0.57
CLK3-216ENST00000564468 PCGF3Q3KNV8 242 aa11.48□□□□□ -0.57
CLK3-216ENST00000564468 MBNL2Q5VZF2 373 aaKnown RBP11.48□□□□□ -0.57
CLK3-216ENST00000564468 ZCCHC24Q8N2G6 241 aaKnown RBP11.48□□□□□ -0.57
CLK3-216ENST00000564468 ZNF786Q8N393 782 aa11.48□□□□□ -0.57
CLK3-216ENST00000564468 SLC26A10Q8NG04 563 aa11.48□□□□□ -0.57
CLK3-216ENST00000564468 OR2AJ1Q8NGZ0 328 aa11.48□□□□□ -0.57
CLK3-216ENST00000564468 OR1F12Q8NHA8 337 aa11.48□□□□□ -0.57
CLK3-216ENST00000564468 ABHD4Q8TB40 342 aa11.48□□□□□ -0.57
CLK3-216ENST00000564468 FEVQ99581 238 aa11.48□□□□□ -0.57
CLK3-216ENST00000564468 PLA2G12AQ9BZM1 189 aa11.48□□□□□ -0.57
CLK3-216ENST00000564468 HDHD2Q9H0R4 259 aa11.48□□□□□ -0.57
CLK3-216ENST00000564468 TPK1Q9H3S4 243 aa11.48□□□□□ -0.57
CLK3-216ENST00000564468 HINT3Q9NQE9 182 aaKnown RBP11.48□□□□□ -0.57
CLK3-216ENST00000564468 CYSLTR2Q9NS75 346 aa11.48□□□□□ -0.57
CLK3-216ENST00000564468 PDP1Q9P0J1 537 aaPredicted RBP11.48□□□□□ -0.57
CLK3-216ENST00000564468 MYEF2Q9P2K5 600 aaKnown RBP11.48□□□□□ -0.57
CLK3-216ENST00000564468 CGGBP1Q9UFW8 167 aaPredicted RBP11.48□□□□□ -0.57
CLK3-216ENST00000564468 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.47□□□□□ -0.571e-6■■□□□ 12.5
CLK3-216ENST00000564468 PLSCR5A0PG75 271 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 C17orf100A8MU93 164 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 VWC2LB2RUY7 222 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 H3BN98 237 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 SOX14O95416 240 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 CLPTM1O96005 669 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 ZNF823P16415 610 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 ZNF3P17036 446 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 NR4A2P43354 598 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 BLVRAP53004 296 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 ERVS71-1P61550 626 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 HIST1H3AP68431 136 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 MRPS11P82912 194 aaKnown RBP11.47□□□□□ -0.57
CLK3-216ENST00000564468 ECH1Q13011 328 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 MAD2L1BPQ15013 274 aaPredicted RBP11.47□□□□□ -0.57
CLK3-216ENST00000564468 CCDC92Q53HC0 331 aaPredicted RBP11.47□□□□□ -0.57
CLK3-216ENST00000564468 FAM209AQ5JX71 171 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 ELFN2Q5R3F8 820 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 HIST2H3PS2Q5TEC6 136 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 HIST2H3AQ71DI3 136 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 ZNF101Q8IZC7 436 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 MAPK1IP1LQ8NDC0 245 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 PROKR2Q8NFJ6 384 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 OR5L1Q8NGL2 311 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 OR8D4Q8NGM9 314 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 SLC25A40Q8TBP6 338 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 DNAJC9Q8WXX5 260 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 NRBF2Q96F24 287 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 MARS2Q96GW9 593 aaKnown RBP11.47□□□□□ -0.57
CLK3-216ENST00000564468 COQ7Q99807 217 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 NIPSNAP1Q9BPW8 284 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 NKIRAS2Q9NYR9 191 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 GRIP1Q9Y3R0 1128 aa11.47□□□□□ -0.57
CLK3-216ENST00000564468 NBEAL1Q6ZS30 2694 aa11.46□□□□□ -0.57
CLK3-216ENST00000564468 MALRD1Q5VYJ5 2156 aa11.46□□□□□ -0.57
CLK3-216ENST00000564468 RIIAD1A6NNX1 92 aa11.46□□□□□ -0.57
CLK3-216ENST00000564468 RER1O15258 196 aa11.46□□□□□ -0.57
CLK3-216ENST00000564468 TLX2O43763 284 aaPredicted RBP11.46□□□□□ -0.57
CLK3-216ENST00000564468 CIB2O75838 187 aa11.46□□□□□ -0.57
CLK3-216ENST00000564468 IGFBP1P08833 259 aaPredicted RBP11.46□□□□□ -0.57
CLK3-216ENST00000564468 NAT2P11245 290 aa11.46□□□□□ -0.57
CLK3-216ENST00000564468 GIFP27352 417 aa11.46□□□□□ -0.57
CLK3-216ENST00000564468 FMO3P31513 532 aa11.46□□□□□ -0.57
CLK3-216ENST00000564468 GRK5P34947 590 aa11.46□□□□□ -0.57
CLK3-216ENST00000564468 MEP1BQ16820 701 aa11.46□□□□□ -0.57
CLK3-216ENST00000564468 ZMAT1Q5H9K5 638 aa11.46□□□□□ -0.57
CLK3-216ENST00000564468 C1orf146Q5VVC0 180 aa11.46□□□□□ -0.57
CLK3-216ENST00000564468 RFPL4BQ6ZWI9 263 aa11.46□□□□□ -0.57
CLK3-216ENST00000564468 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.46□□□□□ -0.57
CLK3-216ENST00000564468 CYB561A3Q8NBI2 242 aa11.46□□□□□ -0.57
CLK3-216ENST00000564468 SLC37A3Q8NCC5 494 aa11.46□□□□□ -0.57
CLK3-216ENST00000564468 KLF14Q8TD94 323 aaPredicted RBP11.46□□□□□ -0.57
CLK3-216ENST00000564468 RDH5Q92781 318 aa11.46□□□□□ -0.57
CLK3-216ENST00000564468 DIRC2Q96SL1 478 aa11.46□□□□□ -0.57
CLK3-216ENST00000564468 DDOQ99489 341 aa11.46□□□□□ -0.57
CLK3-216ENST00000564468 TEX12Q9BXU0 123 aa11.46□□□□□ -0.57
CLK3-216ENST00000564468 OR2J1Q9GZK6 312 aa11.46□□□□□ -0.57
CLK3-216ENST00000564468 FN3KQ9H479 309 aa11.46□□□□□ -0.57
CLK3-216ENST00000564468 ARMC1Q9NVT9 282 aa11.46□□□□□ -0.57
CLK3-216ENST00000564468 LHFPL6Q9Y693 200 aa11.46□□□□□ -0.57
CLK3-216ENST00000564468 FBN1P35555 2871 aaKnown RBP11.46□□□□□ -0.58
CLK3-216ENST00000564468 A0A096LNT2 108 aa11.45□□□□□ -0.58
CLK3-216ENST00000564468 CD5LO43866 347 aa11.45□□□□□ -0.58
CLK3-216ENST00000564468 GPANK1O95872 356 aa11.45□□□□□ -0.58
CLK3-216ENST00000564468 NGFP01138 241 aa11.45□□□□□ -0.58
CLK3-216ENST00000564468 TFP02787 698 aa11.45□□□□□ -0.58
CLK3-216ENST00000564468 OSMP13725 252 aa11.45□□□□□ -0.58
CLK3-216ENST00000564468 PAICSP22234 425 aaKnown RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms