RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 DHHO43323 396 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 CYTIPO60759 359 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 RAMP1O60894 148 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 TMEM127O75204 238 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 SC5DO75845 299 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 MPZL1O95297 269 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 ABHD16AO95870 558 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 RAF1P04049 648 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 ZNF708P17019 499 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 NPR2P20594 1047 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 CD40LGP29965 261 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 DCTDP32321 178 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 RFC3P40938 356 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 LHX2P50458 406 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 PSMD7P51665 324 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 ZNF133P52736 654 aaPredicted RBP7.9□□□□□ -1.14
VPS39-207ENST00000563692 PPP5CP53041 499 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 LSM6P62312 80 aaKnown RBP7.9□□□□□ -1.14
VPS39-207ENST00000563692 SRYQ05066 204 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 HNRNPA0Q13151 305 aaKnown RBP7.9□□□□□ -1.14
VPS39-207ENST00000563692 TAF13Q15543 124 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 HSD17B12Q53GQ0 312 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 C10orf128Q5T292 105 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 DDI2Q5TDH0 399 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 LRFN4Q6PJG9 635 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 LRRN1Q6UXK5 716 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 FCRLAQ7L513 359 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 AAED1Q7RTV5 226 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 DCXRQ7Z4W1 244 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 C20orf196Q8IYI0 205 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 ZNF808Q8N4W9 903 aaPredicted RBP7.9□□□□□ -1.14
VPS39-207ENST00000563692 OR2G2Q8NGZ5 317 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 RPS4Y2Q8TD47 263 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 GPR148Q8TDV2 347 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 ROBO4Q8WZ75 1007 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 KCTD12Q96CX2 325 aaKnown RBP7.9□□□□□ -1.14
VPS39-207ENST00000563692 UCN2Q96RP3 112 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 RBM24Q9BX46 236 aaKnown RBP7.9□□□□□ -1.14
VPS39-207ENST00000563692 NIPAL2Q9H841 368 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 AKIP1Q9NQ31 210 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 CENPMQ9NSP4 180 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 EMC3Q9P0I2 261 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 FRRS1LQ9P0K9 344 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 CYB5R1Q9UHQ9 305 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 ADAM30Q9UKF2 790 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 POLR1DQ9Y2S0 133 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 CMAHPQ9Y471 501 aa7.9□□□□□ -1.14
VPS39-207ENST00000563692 CPAMD8Q8IZJ3 1885 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 TRGV5A0A0B4J1U4 118 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 IGKV1D-43A0A0B4J1Z2 117 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 OR6C65A6NJZ3 312 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 H0YC42 278 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 ZFPL1O95159 310 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 UCHL1P09936 223 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 CLEC2LP0C7M8 214 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 CPN1P15169 458 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 SRMP19623 302 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 RAB3BP20337 219 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 MSR1P21757 451 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 COL8A1P27658 744 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 ETV6P41212 452 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 RPS27P42677 84 aaKnown RBP7.89□□□□□ -1.15
VPS39-207ENST00000563692 CLDN18P56856 261 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 NANOS3P60323 173 aaKnown RBP7.89□□□□□ -1.15
VPS39-207ENST00000563692 PPP3R1P63098 170 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 RNPS1Q15287 305 aaKnown RBP7.89□□□□□ -1.15
VPS39-207ENST00000563692 C3AR1Q16581 482 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 SGCAQ16586 387 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 Q499Y3 187 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 ZNF787Q6DD87 383 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 ABLIM2Q6H8Q1 611 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 XKRXQ6PP77 449 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 ZNF704Q6ZNC4 412 aaPredicted RBP7.89□□□□□ -1.15
VPS39-207ENST00000563692 MRGPRGQ86SM5 289 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 SIAH3Q8IW03 269 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 MCEMP1Q8IX19 187 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 GPR137CQ8N3F9 429 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 ZIC4Q8N9L1 334 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 GJC3Q8NFK1 279 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 RNF133Q8WVZ7 376 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 SLAMF6Q96DU3 332 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 CCDC120Q96HB5 630 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 ZNF385AQ96PM9 386 aaKnown RBP7.89□□□□□ -1.15
VPS39-207ENST00000563692 PDCD1LG2Q9BQ51 273 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 SLC30A2Q9BRI3 323 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 BARHL1Q9BZE3 327 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 ULBP2Q9BZM5 246 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 DEFB127Q9H1M4 99 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 SLC6A15Q9H2J7 730 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 NELFAQ9H3P2 528 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 RNF122Q9H9V4 155 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 SLC24A3Q9HC58 644 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 SMURF1Q9HCE7 757 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 POLE4Q9NR33 117 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 TINAGQ9UJW2 476 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 ING1Q9UK53 422 aaPredicted RBP7.89□□□□□ -1.15
VPS39-207ENST00000563692 FLVCR1Q9Y5Y0 555 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 R4GMQ9 66 aa7.89□□□□□ -1.15
VPS39-207ENST00000563692 TMEM269A0A1B0GVZ9 245 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 OR4C45A6NMZ5 311 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms