RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 GADD45AP24522 165 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 UGT2B10P36537 528 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 OR3A2P47893 321 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 TAS2R43P59537 309 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 SIRPAP78324 504 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 IFITM2Q01629 132 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 CD300CQ08708 224 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 RIPPLY1Q0D2K3 151 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 LY6DQ14210 128 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 STK11Q15831 433 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 FAM27BQ5VT28 67 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 LIPNQ5VXI9 398 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 LRRN1Q6UXK5 716 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 SEM1Q6ZVN7 128 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 SPATC1Q76KD6 591 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 KRT77Q7Z794 578 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 ZNF679Q8IYX0 411 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 UBE2J2Q8N2K1 259 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 YIPF7Q8N8F6 280 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 DYNC2LI1Q8TCX1 351 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 MAP6Q96JE9 813 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 ZNF416Q9BWM5 594 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 C1orf198Q9H425 327 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 SIAEQ9HAT2 523 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 NEK6Q9HC98 313 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 NDUFB11Q9NX14 153 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 ASH2LQ9UBL3 628 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 PRSS50Q9UI38 385 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 GDF2Q9UK05 429 aaPredicted RBP9.87□□□□□ -0.83
USP3-218ENST00000560202 POU2F3Q9UKI9 436 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 GRIP1Q9Y3R0 1128 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 FAM215AQ9Y5M1 114 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 SIRT4Q9Y6E7 314 aaPredicted RBP9.87□□□□□ -0.83
USP3-218ENST00000560202 FAM25AB3EWG3 89 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 FAM25CB3EWG5 89 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 FAM25GB3EWG6 89 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 ABHD16AO95870 558 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 WNT11O96014 354 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 APOA1P02647 267 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 M6PRP20645 277 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 NR4A1P22736 598 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 PSMB10P40306 273 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 KIR2DL2P43627 348 aaPredicted RBP9.87□□□□□ -0.83
USP3-218ENST00000560202 FAPQ12884 760 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 GPR50Q13585 617 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 ENDOGQ14249 297 aaKnown RBP9.87□□□□□ -0.83
USP3-218ENST00000560202 FBXW9Q5XUX1 488 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 ZNF544Q6NX49 715 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 LRRC18Q8N456 261 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 CNEP1R1Q8N9A8 125 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 RNF133Q8WVZ7 376 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 SLAMF6Q96DU3 332 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 ELOVL3Q9HB03 270 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 MALT1Q9UDY8 824 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 ST6GALNAC2Q9UJ37 374 aa9.87□□□□□ -0.83
USP3-218ENST00000560202 HSPB2A8KAH6 182 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 OGG1O15527 345 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 LRRTM2O43300 516 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 AIREO43918 545 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 SLC19A2O60779 497 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 ZNF254O75437 659 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 TOXO94900 526 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 RPP14O95059 124 aaKnown RBP9.86□□□□□ -0.83
USP3-218ENST00000560202 CST2P09228 141 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 EDN3P14138 238 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 B4GALT1P15291 398 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 PSMA1P25786 263 aaKnown RBP9.86□□□□□ -0.83
USP3-218ENST00000560202 TGM4P49221 684 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 FOXG1P55316 489 aaPredicted RBP9.86□□□□□ -0.83
USP3-218ENST00000560202 PER3P56645 1201 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 GNG2P59768 71 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 ARF1P84077 181 aaKnown RBP9.86□□□□□ -0.83
USP3-218ENST00000560202 IFITM3Q01628 133 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 FOXF2Q12947 444 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 MRPL28Q13084 256 aaKnown RBP9.86□□□□□ -0.83
USP3-218ENST00000560202 HSPB2Q16082 182 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 NRN1LQ496H8 165 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 CCDC58Q4VC31 144 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 RPL22L1Q6P5R6 122 aaKnown RBP9.86□□□□□ -0.83
USP3-218ENST00000560202 DEGS2Q6QHC5 323 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 PCSK4Q6UW60 755 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 TFAP2EQ6VUC0 442 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 ZNF813Q6ZN06 617 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 CFAP77Q6ZQR2 320 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 ABHD12BQ7Z5M8 362 aaPredicted RBP9.86□□□□□ -0.83
USP3-218ENST00000560202 DOLPP1Q86YN1 238 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 IQCF2Q8IXL9 164 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 SLC22A24Q8N4F4 322 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 RPRMLQ8N4K4 120 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 OR6K3Q8NGY3 331 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 HAVCR2Q8TDQ0 301 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 CAPSLQ8WWF8 208 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 RPL3LQ92901 407 aaKnown RBP9.86□□□□□ -0.83
USP3-218ENST00000560202 RNF166Q96A37 237 aaPredicted RBP9.86□□□□□ -0.83
USP3-218ENST00000560202 OR51E2Q9H255 320 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 TP63Q9H3D4 680 aaPredicted RBP9.86□□□□□ -0.83
USP3-218ENST00000560202 SLA2Q9H6Q3 261 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 CENPMQ9NSP4 180 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 ZNF835Q9Y2P0 537 aa9.86□□□□□ -0.83
USP3-218ENST00000560202 SF3B6Q9Y3B4 125 aaKnown RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms