RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 CACNG7P62955 275 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 XIAPP98170 497 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 CAPRIN1Q14444 709 aaKnown RBP1.07□□□□□ -2.24
USP3-209ENST00000558925 RGNQ15493 299 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 SNRNP35Q16560 246 aaKnown RBP1.07□□□□□ -2.24
USP3-209ENST00000558925 KLHL40Q2TBA0 621 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 ZNF658BQ4V348 819 aaPredicted RBP1.07□□□□□ -2.24
USP3-209ENST00000558925 C2orf83Q53S99 150 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 CT45A1Q5HYN5 189 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 HES5Q5TA89 166 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 ANKRD22Q5VYY1 191 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 ADNP2Q6IQ32 1131 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 TTC23LQ6PF05 361 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 SPESP1Q6UW49 350 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 IGFL2Q6UWQ7 119 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 TEX43Q6ZNM6 134 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 MBOAT2Q6ZWT7 520 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 HDDC2Q7Z4H3 204 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 CAMK2N1Q7Z7J9 78 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 TMEM135Q86UB9 458 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 MICU2Q8IYU8 434 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 JAGN1Q8N5M9 183 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 FAM86B1Q8N7N1 296 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 LINC01555Q8NAE3 123 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 GPR26Q8NDV2 337 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 MDS2Q8NDY4 140 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 OR52E2Q8NGJ4 325 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 OR4S2Q8NH73 311 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 CT45A3Q8NHU0 189 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 MCOLN3Q8TDD5 553 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 CD300LFQ8TDQ1 290 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 RNF138Q8WVD3 245 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 APH1BQ8WW43 257 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 GIMAP1Q8WWP7 306 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 TOP1MTQ969P6 601 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 RPEQ96AT9 228 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 CREB3L1Q96BA8 519 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 ELSPBP1Q96BH3 223 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 NEURL3Q96EH8 262 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 CEP170P1Q96L14 293 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 FOXC2Q99958 501 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 SH3GL3Q99963 347 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 CHAC1Q9BUX1 264 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 CHID1Q9BWS9 393 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 ZYG11BQ9C0D3 744 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 SPNS1Q9H2V7 528 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 EDA2RQ9HAV5 297 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 SLC40A1Q9NP59 571 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 MYOZ2Q9NPC6 264 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 CHRAC1Q9NRG0 131 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 CLN6Q9NWW5 311 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 ANAPC11Q9NYG5 84 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 RBAKQ9NYW8 714 aaPredicted RBP1.07□□□□□ -2.24
USP3-209ENST00000558925 UVRAGQ9P2Y5 699 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 PEF1Q9UBV8 284 aaKnown RBP1.07□□□□□ -2.24
USP3-209ENST00000558925 NUFIP1Q9UHK0 495 aaKnown RBP1.07□□□□□ -2.24
USP3-209ENST00000558925 CD84Q9UIB8 345 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 ZNF223Q9UK11 482 aaPredicted RBP1.07□□□□□ -2.24
USP3-209ENST00000558925 UBIAD1Q9Y5Z9 338 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 WSB1Q9Y6I7 421 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 MN1Q10571 1320 aaPredicted RBP1.07□□□□□ -2.24
USP3-209ENST00000558925 CENPJQ9HC77 1338 aaPredicted RBP1.07□□□□□ -2.24
USP3-209ENST00000558925 CABIN1Q9Y6J0 2220 aa1.07□□□□□ -2.24
USP3-209ENST00000558925 IGKV6D-41A0A0C4DH26 115 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 A0A1B0GUA9 196 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 TMEM120BA0PK00 339 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 TSPAN11A1L157 253 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 PINLYPA6NC86 204 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 A8MU10 97 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 SERPINE3A8MV23 424 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 INS-IGF2F8WCM5 200 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 H0Y9J4 135 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 TMX2-CTNND1H3BSU7 103 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 NME4O00746 187 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 SLC19A2O60779 497 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 RAB3DO95716 219 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 SLC25A27O95847 323 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 MBP02144 154 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 PLEKP08567 350 aaPredicted RBP1.06□□□□□ -2.24
USP3-209ENST00000558925 HOXC4P09017 264 aaPredicted RBP1.06□□□□□ -2.24
USP3-209ENST00000558925 PNMA6AP0CW24 399 aaPredicted RBP1.06□□□□□ -2.24
USP3-209ENST00000558925 SMIM10L1P0DMW3 83 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 CD37P11049 281 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 TCP1P17987 556 aaKnown RBP1.06□□□□□ -2.24
USP3-209ENST00000558925 ATF6P18850 670 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 PMCHP20382 165 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 MDKP21741 143 aaPredicted RBP1.06□□□□□ -2.24
USP3-209ENST00000558925 USF1P22415 310 aaPredicted RBP1.06□□□□□ -2.24
USP3-209ENST00000558925 U2AF2P26368 475 aaKnown RBP eCLIP1.06□□□□□ -2.24
USP3-209ENST00000558925 BMI1P35226 326 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 GPR1P46091 355 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 CYB561P49447 251 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 UBE2AP49459 152 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 NDUFA8P51970 172 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 PSMD4P55036 377 aaKnown RBP1.06□□□□□ -2.24
USP3-209ENST00000558925 ATP5J2P56134 94 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 PPP1CBP62140 327 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 PRR3P79522 188 aaKnown RBP1.06□□□□□ -2.24
USP3-209ENST00000558925 LCN2P80188 198 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 HMGCS1Q01581 520 aa1.06□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms