RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 SLC35A1P78382 337 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 BLOC1S1P78537 153 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 ARG2P78540 354 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 MYBPC1Q00872 1141 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 CDC20Q12834 499 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 ZP4Q12836 540 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 RAPSNQ13702 412 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 MAD2L1BPQ15013 274 aaPredicted RBP4.55□□□□□ -1.68
LDLR-209ENST00000558528 OR1C1Q15619 314 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 ZNF74Q16587 644 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 AARDQ4LEZ3 155 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 RNASE12Q5GAN4 147 aaKnown RBP4.55□□□□□ -1.68
LDLR-209ENST00000558528 C1orf140Q5VVS0 124 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 C12orf73Q69YU5 71 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 HIST2H2BCQ6DN03 193 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 ARHGAP11AQ6P4F7 1023 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 ZNF620Q6ZNG0 422 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 TRILQ7L0X0 811 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 COMTD1Q86VU5 262 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 ADGRG3Q86Y34 549 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 EGFL6Q8IUX8 553 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 GID4Q8IVV7 300 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 BEST3Q8N1M1 668 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 GTPBP8Q8N3Z3 284 aaPredicted RBP4.55□□□□□ -1.68
LDLR-209ENST00000558528 OR2M3Q8NG83 312 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 OR5J2Q8NH18 312 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 OCC1Q8TAD7 63 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 FAM81AQ8TBF8 368 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 TMEM163Q8TC26 289 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 FANK1Q8TC84 345 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 FNDC8Q8TC99 324 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 FCGR1BQ92637 280 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 NTNG2Q96CW9 530 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 GNRHR2Q96P88 292 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 GPX7Q96SL4 187 aaPredicted RBP4.55□□□□□ -1.68
LDLR-209ENST00000558528 SLX1AQ9BQ83 275 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 PCGF1Q9BSM1 259 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 RSPO3Q9BXY4 272 aaPredicted RBP4.55□□□□□ -1.68
LDLR-209ENST00000558528 RACGAP1Q9H0H5 632 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 OR52D1Q9H346 318 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 TVP23BQ9NYZ1 205 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 CNOT2Q9NZN8 540 aaKnown RBP4.55□□□□□ -1.68
LDLR-209ENST00000558528 MED11Q9P086 117 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 SIGLEC7Q9Y286 467 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 B3GALT5Q9Y2C3 310 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 A3GALT2U3KPV4 340 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 ADAMTS9Q9P2N4 1935 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 TRAV17A0A0B4J275 112 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 A0A1W2PRG6 482 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 A6NIZ1 184 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 ARGFXA6NJG6 315 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 CENPBD1B2RD01 187 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 PRR23D1E9PI22 279 aaPredicted RBP4.54□□□□□ -1.68
LDLR-209ENST00000558528 H0YIZ8 118 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 BLOC1S5-TXNDC5H3BN57 136 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 IFNL4K9M1U5 179 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 XKRYO14609 159 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 TLX2O43763 284 aaPredicted RBP4.54□□□□□ -1.68
LDLR-209ENST00000558528 SLC25A17O43808 307 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 ZNF354AO60765 605 aaPredicted RBP4.54□□□□□ -1.68
LDLR-209ENST00000558528 FAM20BO75063 409 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 NPIPB7O75200 414 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 NTN1O95631 604 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 FADS2O95864 444 aaKnown RBP4.54□□□□□ -1.68
LDLR-209ENST00000558528 WDPCPO95876 746 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 CH25HO95992 272 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 RENP00797 406 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 THY1P04216 161 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 CHRM2P08172 466 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 CELA2AP08217 269 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 CD14P08571 375 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 ASAH2BP0C7U1 165 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 PRR23D2P0DMB1 279 aaPredicted RBP4.54□□□□□ -1.68
LDLR-209ENST00000558528 TFPIP10646 304 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 PIPP12273 146 aaPredicted RBP4.54□□□□□ -1.68
LDLR-209ENST00000558528 MAKP20794 623 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 CRHBPP24387 322 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 PCSK6P29122 969 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 POLR2IP36954 125 aaKnown RBP4.54□□□□□ -1.68
LDLR-209ENST00000558528 GPR4P46093 362 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 ASCL1P50553 236 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 CCL11P51671 97 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 SH3BGRP55822 239 aaPredicted RBP4.54□□□□□ -1.68
LDLR-209ENST00000558528 RAP1BP61224 184 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 RAP1AP62834 184 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 SORDQ00796 357 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 PLGLB1Q02325 96 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 CD47Q08722 323 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 Q0VFX4 171 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 PMS2P3Q13401 168 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 TUBA3CQ13748 450 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 SLC10A1Q14973 349 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 SF3B4Q15427 424 aaKnown RBP eCLIP4.54□□□□□ -1.683e-17■■■□□ 14.8
LDLR-209ENST00000558528 TGIF1Q15583 401 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 BCL2A1Q16548 175 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 SGCBQ16585 318 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 PGGHGQ32M88 737 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 PLPPR5Q32ZL2 321 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 NDUFAF6Q330K2 333 aa4.54□□□□□ -1.68
LDLR-209ENST00000558528 ALG10Q5BKT4 473 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms