RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 RAB30Q15771 203 aa11.52□□□□□ -0.56
LDLR-207ENST00000558013 KCTD18Q6PI47 426 aaPredicted RBP11.52□□□□□ -0.56
LDLR-207ENST00000558013 SLC26A10Q8NG04 563 aa11.52□□□□□ -0.56
LDLR-207ENST00000558013 ST7LQ8TDW4 575 aa11.52□□□□□ -0.56
LDLR-207ENST00000558013 ASB17Q8WXJ9 295 aa11.52□□□□□ -0.56
LDLR-207ENST00000558013 FGGYQ96C11 551 aa11.52□□□□□ -0.56
LDLR-207ENST00000558013 WDR13Q9H1Z4 485 aa11.52□□□□□ -0.56
LDLR-207ENST00000558013 TRAV14DV4A0A0A6YYC5 116 aa11.52□□□□□ -0.57
LDLR-207ENST00000558013 TMEM82A0PJX8 343 aa11.52□□□□□ -0.57
LDLR-207ENST00000558013 METTL12A8MUP2 240 aa11.52□□□□□ -0.57
LDLR-207ENST00000558013 PHYHO14832 338 aa11.52□□□□□ -0.57
LDLR-207ENST00000558013 MT-ATP6P00846 226 aa11.52□□□□□ -0.57
LDLR-207ENST00000558013 ACHEP22303 614 aa11.52□□□□□ -0.57
LDLR-207ENST00000558013 SLC26A5P58743 744 aa11.52□□□□□ -0.57
LDLR-207ENST00000558013 PMPCAQ10713 525 aa11.52□□□□□ -0.57
LDLR-207ENST00000558013 ATXN7L3Q14CW9 347 aaPredicted RBP11.52□□□□□ -0.57
LDLR-207ENST00000558013 ZMYND11Q15326 602 aa11.52□□□□□ -0.57
LDLR-207ENST00000558013 ATPAF1Q5TC12 328 aaPredicted RBP11.52□□□□□ -0.57
LDLR-207ENST00000558013 ZNF660Q6AZW8 331 aaPredicted RBP11.52□□□□□ -0.57
LDLR-207ENST00000558013 TMPRSS9Q7Z410 1059 aa11.52□□□□□ -0.57
LDLR-207ENST00000558013 GRINAQ7Z429 371 aa11.52□□□□□ -0.57
LDLR-207ENST00000558013 GPAT4Q86UL3 456 aa11.52□□□□□ -0.57
LDLR-207ENST00000558013 C15orf40Q8WUR7 153 aa11.52□□□□□ -0.57
LDLR-207ENST00000558013 C12orf10Q9HB07 376 aa11.52□□□□□ -0.57
LDLR-207ENST00000558013 TAS2R8Q9NYW2 309 aa11.52□□□□□ -0.57
LDLR-207ENST00000558013 CKLFQ9UBR5 152 aa11.52□□□□□ -0.57
LDLR-207ENST00000558013 OR52A1Q9UKL2 312 aa11.52□□□□□ -0.57
LDLR-207ENST00000558013 MFSD2BA6NFX1 497 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 RP2O75695 350 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 ITGB2P05107 769 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 CD2P06729 351 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 BTN1A1Q13410 526 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 GLT8D1Q68CQ7 371 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 TMPRSS13Q9BYE2 586 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 MFFQ9GZY8 342 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 CNTD2Q9H8S5 307 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 FGF21Q9NSA1 209 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 NUP50Q9UKX7 468 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 EFNA2O43921 213 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 ZNF735P0CB33 412 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 SLC2A1P11166 492 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 PNLIPRP2P54317 469 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 RNF4P78317 190 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 GSG1LQ6UXU4 331 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 ZNF441Q8N8Z8 693 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 OR52N4Q8NGI2 321 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 OR13C8Q8NGS7 320 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 NUDCD2Q8WVJ2 157 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 HHLA2Q9UM44 414 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 A0A1W2PQD3 144 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 TSPAN4O14817 238 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 TMEM127O75204 238 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 ZNF823P16415 610 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 GNALP38405 381 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 NUP54Q7Z3B4 507 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 BPIFB2Q8N4F0 458 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 MRGPRFQ96AM1 343 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 ADAT3Q96EY9 351 aaPredicted RBP11.51□□□□□ -0.57
LDLR-207ENST00000558013 R4GMQ9 66 aa11.51□□□□□ -0.57
LDLR-207ENST00000558013 OR6C65A6NJZ3 312 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 TO15178 435 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 TIAF1O95411 115 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 KLK2P20151 261 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 M6PRP20645 277 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 ARHGDIBP52566 201 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 MFAP5Q13361 173 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 C3orf33Q6P1S2 294 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 SLC25A45Q8N413 288 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 PAQR4Q8N4S7 273 aaPredicted RBP11.5□□□□□ -0.57
LDLR-207ENST00000558013 BOLLQ8N9W6 283 aaKnown RBP11.5□□□□□ -0.57
LDLR-207ENST00000558013 TTYH1Q9H313 450 aaPredicted RBP11.5□□□□□ -0.57
LDLR-207ENST00000558013 UCK1Q9HA47 277 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 SLC2A4RGQ9NR83 387 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 KIF25Q9UIL4 384 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 CPAMD8Q8IZJ3 1885 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 ZNF736B4DX44 427 aaPredicted RBP11.5□□□□□ -0.57
LDLR-207ENST00000558013 CYB5AP00167 134 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 HOXD4P09016 255 aaPredicted RBP11.5□□□□□ -0.57
LDLR-207ENST00000558013 IGFBP4P22692 258 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 CDAP32320 146 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 SCAND1P57086 179 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 DCAF7P61962 342 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 DHRS2Q13268 280 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 UNC119Q13432 240 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 UBXN2BQ14CS0 331 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 RHOUQ7L0Q8 258 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 C12orf45Q8N5I9 185 aaPredicted RBP11.5□□□□□ -0.57
LDLR-207ENST00000558013 CHST4Q8NCG5 386 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 APCDD1LQ8NCL9 501 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 STEAP2Q8NFT2 490 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 OR6M1Q8NGM8 313 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 OR2I1PQ8NGU4 316 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 ASB10Q8WXI3 467 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 GPR160Q9UJ42 338 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 VSIG4Q9Y279 399 aa11.5□□□□□ -0.57
LDLR-207ENST00000558013 TEX51A0A1B0GUA7 166 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 NPIPA5E9PKD4 350 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 TAS2R19P59542 299 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 HNRNPKP61978 463 aaKnown RBP eCLIP11.49□□□□□ -0.574e-6■■■■□ 21.9
LDLR-207ENST00000558013 TLE3Q04726 772 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms