RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 ELFN2Q5R3F8 820 aa18.39■□□□□ 0.53
VPS29-206ENST00000549578 NCMAPQ5T1S8 102 aa18.39■□□□□ 0.53
VPS29-206ENST00000549578 SPATC1Q76KD6 591 aa18.39■□□□□ 0.53
VPS29-206ENST00000549578 SLC35F2Q8IXU6 374 aa18.39■□□□□ 0.53
VPS29-206ENST00000549578 SLC30A7Q8NEW0 376 aa18.39■□□□□ 0.53
VPS29-206ENST00000549578 THEM6Q8WUY1 208 aa18.39■□□□□ 0.53
VPS29-206ENST00000549578 SLC7A6Q92536 515 aa18.39■□□□□ 0.53
VPS29-206ENST00000549578 ABHD6Q9BV23 337 aa18.39■□□□□ 0.53
VPS29-206ENST00000549578 LAMP5Q9UJQ1 280 aa18.39■□□□□ 0.53
VPS29-206ENST00000549578 COPS3Q9UNS2 423 aa18.39■□□□□ 0.53
VPS29-206ENST00000549578 CRYBG3Q68DQ2 2970 aa18.38■□□□□ 0.53
VPS29-206ENST00000549578 LOC100509620A0A075B734 347 aa18.38■□□□□ 0.53
VPS29-206ENST00000549578 OR6C6A6NF89 314 aa18.38■□□□□ 0.53
VPS29-206ENST00000549578 A6NNC1 897 aa18.38■□□□□ 0.53
VPS29-206ENST00000549578 ABCD4O14678 606 aa18.38■□□□□ 0.53
VPS29-206ENST00000549578 STOMP27105 288 aa18.38■□□□□ 0.53
VPS29-206ENST00000549578 RFLNBQ8N5W9 214 aa18.38■□□□□ 0.53
VPS29-206ENST00000549578 OR1F12Q8NHA8 337 aa18.38■□□□□ 0.53
VPS29-206ENST00000549578 LGALS12Q96DT0 336 aa18.38■□□□□ 0.53
VPS29-206ENST00000549578 SLAMF6Q96DU3 332 aa18.38■□□□□ 0.53
VPS29-206ENST00000549578 TBX5Q99593 518 aa18.38■□□□□ 0.53
VPS29-206ENST00000549578 TTTY10Q9BZA0 68 aa18.38■□□□□ 0.53
VPS29-206ENST00000549578 HDHD2Q9H0R4 259 aa18.38■□□□□ 0.53
VPS29-206ENST00000549578 RPL36Q9Y3U8 105 aaKnown RBP18.38■□□□□ 0.53
VPS29-206ENST00000549578 PCDHGB5Q9Y5G0 923 aa18.38■□□□□ 0.53
VPS29-206ENST00000549578 DCHS2Q6V1P9 2916 aa18.37■□□□□ 0.53
VPS29-206ENST00000549578 HEATR1Q9H583 2144 aaKnown RBP18.37■□□□□ 0.53
VPS29-206ENST00000549578 PTHP01270 115 aa18.37■□□□□ 0.53
VPS29-206ENST00000549578 LYNP07948 512 aa18.37■□□□□ 0.53
VPS29-206ENST00000549578 ALOX5APP20292 161 aa18.37■□□□□ 0.53
VPS29-206ENST00000549578 CALCRP30988 508 aa18.37■□□□□ 0.53
VPS29-206ENST00000549578 APLNRP35414 380 aa18.37■□□□□ 0.53
VPS29-206ENST00000549578 NR1H2P55055 460 aa18.37■□□□□ 0.53
VPS29-206ENST00000549578 ADAM5Q6NVV9 412 aa18.37■□□□□ 0.53
VPS29-206ENST00000549578 PAQR4Q8N4S7 273 aaPredicted RBP18.37■□□□□ 0.53
VPS29-206ENST00000549578 ZNF454Q8N9F8 522 aa18.37■□□□□ 0.53
VPS29-206ENST00000549578 OR10H4Q8NGA5 316 aa18.37■□□□□ 0.53
VPS29-206ENST00000549578 POM121L2Q96KW2 1035 aa18.37■□□□□ 0.53
VPS29-206ENST00000549578 ATF6BQ99941 703 aa18.37■□□□□ 0.53
VPS29-206ENST00000549578 RHNO1Q9BSD3 238 aa18.37■□□□□ 0.53
VPS29-206ENST00000549578 CENPMQ9NSP4 180 aa18.37■□□□□ 0.53
VPS29-206ENST00000549578 ABCA4P78363 2273 aa18.36■□□□□ 0.53
VPS29-206ENST00000549578 IGHV2OR16-5A0A0B4J2B6 119 aa18.36■□□□□ 0.53
VPS29-206ENST00000549578 C5orf49A4QMS7 147 aa18.36■□□□□ 0.53
VPS29-206ENST00000549578 ATP6V1G2-DDX39BF2Z307 99 aa18.36■□□□□ 0.53
VPS29-206ENST00000549578 XPNPEP2O43895 674 aa18.36■□□□□ 0.53
VPS29-206ENST00000549578 CRYAAP02489 173 aa18.36■□□□□ 0.53
VPS29-206ENST00000549578 CD3EP07766 207 aa18.36■□□□□ 0.53
VPS29-206ENST00000549578 DBHP09172 617 aa18.36■□□□□ 0.53
VPS29-206ENST00000549578 CCNOP22674 350 aa18.36■□□□□ 0.53
VPS29-206ENST00000549578 TBC1D28Q2M2D7 210 aa18.36■□□□□ 0.53
VPS29-206ENST00000549578 BPIFB6Q8NFQ5 453 aa18.36■□□□□ 0.53
VPS29-206ENST00000549578 Q9H521 79 aa18.36■□□□□ 0.53
VPS29-206ENST00000549578 HECTD1Q9ULT8 2610 aa18.36■□□□□ 0.53
VPS29-206ENST00000549578 PLAUP00749 431 aa18.35■□□□□ 0.53
VPS29-206ENST00000549578 COX5BP10606 129 aa18.35■□□□□ 0.53
VPS29-206ENST00000549578 GDI2P50395 445 aaKnown RBP18.35■□□□□ 0.53
VPS29-206ENST00000549578 C6orf141Q5SZD1 244 aa18.35■□□□□ 0.53
VPS29-206ENST00000549578 ZNF787Q6DD87 383 aa18.35■□□□□ 0.53
VPS29-206ENST00000549578 ZNF295-AS1Q8N0V1 137 aa18.35■□□□□ 0.53
VPS29-206ENST00000549578 RNF133Q8WVZ7 376 aa18.35■□□□□ 0.53
VPS29-206ENST00000549578 RADILQ96JH8 1075 aa18.35■□□□□ 0.53
VPS29-206ENST00000549578 COQ7Q99807 217 aa18.35■□□□□ 0.53
VPS29-206ENST00000549578 KCNS3Q9BQ31 491 aa18.35■□□□□ 0.53
VPS29-206ENST00000549578 DDX28Q9NUL7 540 aaKnown RBP18.35■□□□□ 0.53
VPS29-206ENST00000549578 EXOGQ9Y2C4 368 aaKnown RBP18.35■□□□□ 0.53
VPS29-206ENST00000549578 RNF115Q9Y4L5 304 aa18.35■□□□□ 0.53
VPS29-206ENST00000549578 TMEM14AQ9Y6G1 99 aa18.35■□□□□ 0.53
VPS29-206ENST00000549578 PRR32B1ATL7 298 aa18.34■□□□□ 0.53
VPS29-206ENST00000549578 ZNF878C9JN71 531 aa18.34■□□□□ 0.53
VPS29-206ENST00000549578 J3QRE1 110 aa18.34■□□□□ 0.53
VPS29-206ENST00000549578 DENRO43583 198 aaKnown RBP18.34■□□□□ 0.53
VPS29-206ENST00000549578 OR2T7P0C7T2 308 aa18.34■□□□□ 0.53
VPS29-206ENST00000549578 ZNF35P13682 527 aa18.34■□□□□ 0.53
VPS29-206ENST00000549578 SLC15A1P46059 708 aa18.34■□□□□ 0.53
VPS29-206ENST00000549578 CXCR4P61073 352 aa18.34■□□□□ 0.53
VPS29-206ENST00000549578 KRT80Q6KB66 452 aa18.34■□□□□ 0.53
VPS29-206ENST00000549578 SLC22A25Q6T423 547 aa18.34■□□□□ 0.53
VPS29-206ENST00000549578 SSX6Q7RTT6 188 aa18.34■□□□□ 0.53
VPS29-206ENST00000549578 IL17RDQ8NFM7 739 aa18.34■□□□□ 0.53
VPS29-206ENST00000549578 KBTBD8Q8NFY9 601 aa18.34■□□□□ 0.53
VPS29-206ENST00000549578 OR52I1Q8NGK6 324 aa18.34■□□□□ 0.53
VPS29-206ENST00000549578 OR2T27Q8NH04 317 aa18.34■□□□□ 0.53
VPS29-206ENST00000549578 COPS4Q9BT78 406 aa18.34■□□□□ 0.53
VPS29-206ENST00000549578 CDH20Q9HBT6 801 aa18.34■□□□□ 0.53
VPS29-206ENST00000549578 MRPS18AQ9NVS2 196 aaKnown RBP18.34■□□□□ 0.53
VPS29-206ENST00000549578 ATPIF1Q9UII2 106 aa18.34■□□□□ 0.53
VPS29-206ENST00000549578 MYRFQ9Y2G1 1151 aa18.34■□□□□ 0.53
VPS29-206ENST00000549578 HRNRQ86YZ3 2850 aaPredicted RBP18.34■□□□□ 0.53
VPS29-206ENST00000549578 A0A1W2PQL4 384 aaPredicted RBP18.33■□□□□ 0.53
VPS29-206ENST00000549578 ZNF670-ZNF695F2Z2N8 137 aa18.33■□□□□ 0.53
VPS29-206ENST00000549578 PSMD9O00233 223 aa18.33■□□□□ 0.53
VPS29-206ENST00000549578 FAM20BO75063 409 aa18.33■□□□□ 0.53
VPS29-206ENST00000549578 GALK2Q01415 458 aa18.33■□□□□ 0.53
VPS29-206ENST00000549578 RAB40BQ12829 278 aa18.33■□□□□ 0.53
VPS29-206ENST00000549578 ECH1Q13011 328 aa18.33■□□□□ 0.53
VPS29-206ENST00000549578 TAF13Q15543 124 aa18.33■□□□□ 0.53
VPS29-206ENST00000549578 RSPO1Q2MKA7 263 aaPredicted RBP18.33■□□□□ 0.53
VPS29-206ENST00000549578 LRRN1Q6UXK5 716 aa18.33■□□□□ 0.53
VPS29-206ENST00000549578 OR1J2Q8NGS2 313 aa18.33■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms