RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 AMBNQ9NP70 447 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 LAMP5Q9UJQ1 280 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 TMEM14AQ9Y6G1 99 aa14.87□□□□□ -0.03
LIG1-204ENST00000542460 SYNGR3O43761 229 aa14.86□□□□□ -0.03
LIG1-204ENST00000542460 CD3EP07766 207 aa14.86□□□□□ -0.03
LIG1-204ENST00000542460 LYNP07948 512 aa14.86□□□□□ -0.03
LIG1-204ENST00000542460 DBTP11182 482 aaKnown RBP14.86□□□□□ -0.03
LIG1-204ENST00000542460 ALOX5APP20292 161 aa14.86□□□□□ -0.03
LIG1-204ENST00000542460 APEX1P27695 318 aaKnown RBP14.86□□□□□ -0.03
LIG1-204ENST00000542460 NAAAQ02083 359 aa14.86□□□□□ -0.03
LIG1-204ENST00000542460 ZNF91Q05481 1191 aa14.86□□□□□ -0.03
LIG1-204ENST00000542460 ECH1Q13011 328 aa14.86□□□□□ -0.03
LIG1-204ENST00000542460 SLC35F2Q8IXU6 374 aa14.86□□□□□ -0.03
LIG1-204ENST00000542460 OR1J2Q8NGS2 313 aa14.86□□□□□ -0.03
LIG1-204ENST00000542460 OR1F12Q8NHA8 337 aa14.86□□□□□ -0.03
LIG1-204ENST00000542460 ST7LQ8TDW4 575 aa14.86□□□□□ -0.03
LIG1-204ENST00000542460 SMAP2Q8WU79 429 aaPredicted RBP14.86□□□□□ -0.03
LIG1-204ENST00000542460 RADILQ96JH8 1075 aa14.86□□□□□ -0.03
LIG1-204ENST00000542460 KCNS3Q9BQ31 491 aa14.86□□□□□ -0.03
LIG1-204ENST00000542460 ABHD6Q9BV23 337 aa14.86□□□□□ -0.03
LIG1-204ENST00000542460 ATPIF1Q9UII2 106 aa14.86□□□□□ -0.03
LIG1-204ENST00000542460 OR6C6A6NF89 314 aa14.85□□□□□ -0.03
LIG1-204ENST00000542460 ABCD4O14678 606 aa14.85□□□□□ -0.03
LIG1-204ENST00000542460 HTR5AP47898 357 aa14.85□□□□□ -0.03
LIG1-204ENST00000542460 GDI2P50395 445 aaKnown RBP14.85□□□□□ -0.03
LIG1-204ENST00000542460 HCCSP53701 268 aa14.85□□□□□ -0.03
LIG1-204ENST00000542460 TBC1D28Q2M2D7 210 aa14.85□□□□□ -0.03
LIG1-204ENST00000542460 KLHL22Q53GT1 634 aa14.85□□□□□ -0.03
LIG1-204ENST00000542460 RHOUQ7L0Q8 258 aa14.85□□□□□ -0.03
LIG1-204ENST00000542460 PIAS4Q8N2W9 510 aaPredicted RBP14.85□□□□□ -0.03
LIG1-204ENST00000542460 THEM6Q8WUY1 208 aa14.85□□□□□ -0.03
LIG1-204ENST00000542460 SLAMF6Q96DU3 332 aa14.85□□□□□ -0.03
LIG1-204ENST00000542460 POM121L2Q96KW2 1035 aa14.85□□□□□ -0.03
LIG1-204ENST00000542460 COQ7Q99807 217 aa14.85□□□□□ -0.03
LIG1-204ENST00000542460 PNRC2Q9NPJ4 139 aaKnown RBP14.85□□□□□ -0.03
LIG1-204ENST00000542460 MRPS18AQ9NVS2 196 aaKnown RBP14.85□□□□□ -0.03
LIG1-204ENST00000542460 EXOGQ9Y2C4 368 aaKnown RBP14.85□□□□□ -0.03
LIG1-204ENST00000542460 PCDHGB1Q9Y5G3 927 aa14.85□□□□□ -0.03
LIG1-204ENST00000542460 LOC100509620A0A075B734 347 aa14.84□□□□□ -0.03
LIG1-204ENST00000542460 FAM221AA4D161 298 aa14.84□□□□□ -0.03
LIG1-204ENST00000542460 DENRO43583 198 aaKnown RBP14.84□□□□□ -0.03
LIG1-204ENST00000542460 APOL3O95236 402 aa14.84□□□□□ -0.03
LIG1-204ENST00000542460 OR2T7P0C7T2 308 aa14.84□□□□□ -0.03
LIG1-204ENST00000542460 LOXP28300 417 aaPredicted RBP14.84□□□□□ -0.03
LIG1-204ENST00000542460 RAB40BQ12829 278 aa14.84□□□□□ -0.03
LIG1-204ENST00000542460 OR4F15Q8NGB8 312 aa14.84□□□□□ -0.03
LIG1-204ENST00000542460 OR10S1Q8NGN2 331 aa14.84□□□□□ -0.03
LIG1-204ENST00000542460 OR2T27Q8NH04 317 aa14.84□□□□□ -0.03
LIG1-204ENST00000542460 RNF133Q8WVZ7 376 aa14.84□□□□□ -0.03
LIG1-204ENST00000542460 LGALS12Q96DT0 336 aa14.84□□□□□ -0.03
LIG1-204ENST00000542460 CNBD2Q96M20 576 aa14.84□□□□□ -0.03
LIG1-204ENST00000542460 ATF6BQ99941 703 aa14.84□□□□□ -0.03
LIG1-204ENST00000542460 CDH20Q9HBT6 801 aa14.84□□□□□ -0.03
LIG1-204ENST00000542460 CENPMQ9NSP4 180 aa14.84□□□□□ -0.03
LIG1-204ENST00000542460 DDX28Q9NUL7 540 aaKnown RBP14.84□□□□□ -0.03
LIG1-204ENST00000542460 RNF115Q9Y4L5 304 aa14.84□□□□□ -0.03
LIG1-204ENST00000542460 IGHV2OR16-5A0A0B4J2B6 119 aa14.83□□□□□ -0.04
LIG1-204ENST00000542460 C5orf49A4QMS7 147 aa14.83□□□□□ -0.04
LIG1-204ENST00000542460 ZNF878C9JN71 531 aa14.83□□□□□ -0.04
LIG1-204ENST00000542460 ZNF670-ZNF695F2Z2N8 137 aa14.83□□□□□ -0.04
LIG1-204ENST00000542460 PHYHO14832 338 aa14.83□□□□□ -0.04
LIG1-204ENST00000542460 FADS2O95864 444 aaKnown RBP14.83□□□□□ -0.04
LIG1-204ENST00000542460 CCL2P13500 99 aa14.83□□□□□ -0.04
LIG1-204ENST00000542460 ZNF35P13682 527 aa14.83□□□□□ -0.04
LIG1-204ENST00000542460 SLC15A1P46059 708 aa14.83□□□□□ -0.04
LIG1-204ENST00000542460 CSNK2BP67870 215 aa14.83□□□□□ -0.04
LIG1-204ENST00000542460 LAIR2Q6ISS4 152 aa14.83□□□□□ -0.04
LIG1-204ENST00000542460 KRT80Q6KB66 452 aa14.83□□□□□ -0.04
LIG1-204ENST00000542460 KCTD18Q6PI47 426 aaPredicted RBP14.83□□□□□ -0.04
LIG1-204ENST00000542460 SLC22A25Q6T423 547 aa14.83□□□□□ -0.04
LIG1-204ENST00000542460 ZNF295-AS1Q8N0V1 137 aa14.83□□□□□ -0.04
LIG1-204ENST00000542460 ASB17Q8WXJ9 295 aa14.83□□□□□ -0.04
LIG1-204ENST00000542460 HS3ST6Q96QI5 342 aa14.83□□□□□ -0.04
LIG1-204ENST00000542460 AMELYQ99218 206 aa14.83□□□□□ -0.04
LIG1-204ENST00000542460 TMEM204Q9BSN7 226 aa14.83□□□□□ -0.04
LIG1-204ENST00000542460 PLCXD1Q9NUJ7 323 aa14.83□□□□□ -0.04
LIG1-204ENST00000542460 KLHDC2Q9Y2U9 406 aa14.83□□□□□ -0.04
LIG1-204ENST00000542460 J3QRE1 110 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 CTAG2O75638 210 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 CCNOP22674 350 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 CALCRP30988 508 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 CXCR4P61073 352 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 GALK2Q01415 458 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 TAF13Q15543 124 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 C6orf141Q5SZD1 244 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 SPATC1Q76KD6 591 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 BPIFB6Q8NFQ5 453 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 OR10H4Q8NGA5 316 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 MARVELD3Q96A59 401 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 C14orf79Q96F83 325 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 COPS3Q9UNS2 423 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 UNC79Q9P2D8 2635 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 CRYBG3Q68DQ2 2970 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 PRR14LQ5THK1 2151 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 IRGMA1A4Y4 181 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 ATP6V1G2-DDX39BF2Z307 99 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 ACTC1P68032 377 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 ACTA1P68133 377 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 SPOCK1Q08629 439 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 RSPO1Q2MKA7 263 aaPredicted RBP14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms