RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 OR52N5Q8NH56 324 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 S100PBPQ96BU1 408 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 SLAMF6Q96DU3 332 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 WACQ9BTA9 647 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 ALG8Q9BVK2 526 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 OR2H1Q9GZK4 316 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 RNF121Q9H920 327 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 KCNJ16Q9NPI9 418 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 PNRC2Q9NPJ4 139 aaKnown RBP16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 ITPR2Q14571 2701 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 ARPC4-TTLL3A0A0A6YYG9 625 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 C16orf97H3BN30 126 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 PHYHO14832 338 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 AGAP20933 346 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 MAP2K4P45985 399 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 RAB1AP62820 205 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 SCRN3Q0VDG4 424 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 ZNF684Q5T5D7 378 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 OR2G6Q5TZ20 316 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 RNLSQ5VYX0 342 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 LRRN1Q6UXK5 716 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 CCDC36Q8IYA8 594 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 ZNF808Q8N4W9 903 aaPredicted RBP16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 STEAP2Q8NFT2 490 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 RNF133Q8WVZ7 376 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 ASB17Q8WXJ9 295 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 NANOS1Q8WY41 292 aaKnown RBP16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 ACTR6Q9GZN1 396 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 WNT5BQ9H1J7 359 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 CENPMQ9NSP4 180 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 CHCHD3Q9NX63 227 aaKnown RBP16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 SLCO1C1Q9NYB5 712 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 SNX5Q9Y5X3 404 aa16.5■□□□□ 0.23
TNFRSF1A-213ENST00000540022 NOTCH2Q04721 2471 aa16.49■□□□□ 0.23
TNFRSF1A-213ENST00000540022 PKDREJQ9NTG1 2253 aa16.49■□□□□ 0.23
TNFRSF1A-213ENST00000540022 SGCEO43556 437 aa16.49■□□□□ 0.23
TNFRSF1A-213ENST00000540022 UBL3O95164 117 aa16.49■□□□□ 0.23
TNFRSF1A-213ENST00000540022 PTHP01270 115 aa16.49■□□□□ 0.23
TNFRSF1A-213ENST00000540022 SMIM18P0DKX4 95 aa16.49■□□□□ 0.23
TNFRSF1A-213ENST00000540022 HOXC12P31275 282 aa16.49■□□□□ 0.23
TNFRSF1A-213ENST00000540022 CDONQ4KMG0 1287 aa16.49■□□□□ 0.23
TNFRSF1A-213ENST00000540022 ZNF774Q6NX45 483 aa16.49■□□□□ 0.23
TNFRSF1A-213ENST00000540022 C22orf34Q6ZV56 151 aa16.49■□□□□ 0.23
TNFRSF1A-213ENST00000540022 DPPA2Q7Z7J5 298 aa16.49■□□□□ 0.23
TNFRSF1A-213ENST00000540022 MDP1Q86V88 176 aa16.49■□□□□ 0.23
TNFRSF1A-213ENST00000540022 NANOGP1Q8N7R0 232 aa16.49■□□□□ 0.23
TNFRSF1A-213ENST00000540022 AKR7LQ8NHP1 331 aa16.49■□□□□ 0.23
TNFRSF1A-213ENST00000540022 SNX33Q8WV41 574 aa16.49■□□□□ 0.23
TNFRSF1A-213ENST00000540022 RNASE6Q93091 150 aaKnown RBP16.49■□□□□ 0.23
TNFRSF1A-213ENST00000540022 OR8B4Q96RC9 309 aa16.49■□□□□ 0.23
TNFRSF1A-213ENST00000540022 PLEK2Q9NYT0 353 aa16.49■□□□□ 0.23
TNFRSF1A-213ENST00000540022 MRM2Q9UI43 246 aaKnown RBP16.49■□□□□ 0.23
TNFRSF1A-213ENST00000540022 A0A087WXM4 84 aa16.48■□□□□ 0.23
TNFRSF1A-213ENST00000540022 CLDN14O95500 239 aa16.48■□□□□ 0.23
TNFRSF1A-213ENST00000540022 GRNP28799 593 aaKnown RBP16.48■□□□□ 0.23
TNFRSF1A-213ENST00000540022 ARR3P36575 388 aa16.48■□□□□ 0.23
TNFRSF1A-213ENST00000540022 OR12D2P58182 307 aa16.48■□□□□ 0.23
TNFRSF1A-213ENST00000540022 ROM1Q03395 351 aa16.48■□□□□ 0.23
TNFRSF1A-213ENST00000540022 EMX1Q04741 257 aaPredicted RBP16.48■□□□□ 0.23
TNFRSF1A-213ENST00000540022 EGR3Q06889 387 aa16.48■□□□□ 0.23
TNFRSF1A-213ENST00000540022 DOC2BQ14184 412 aa16.48■□□□□ 0.23
TNFRSF1A-213ENST00000540022 GSG1Q2KHT4 349 aa16.48■□□□□ 0.23
TNFRSF1A-213ENST00000540022 TP53I3Q53FA7 332 aa16.48■□□□□ 0.23
TNFRSF1A-213ENST00000540022 PABPC1L2AQ5JQF8 200 aa16.48■□□□□ 0.23
TNFRSF1A-213ENST00000540022 ELFN2Q5R3F8 820 aa16.48■□□□□ 0.23
TNFRSF1A-213ENST00000540022 TIMM23BQ5SRD1 257 aa16.48■□□□□ 0.23
TNFRSF1A-213ENST00000540022 KCTD18Q6PI47 426 aaPredicted RBP16.48■□□□□ 0.23
TNFRSF1A-213ENST00000540022 VASH1Q7L8A9 365 aaPredicted RBP16.48■□□□□ 0.23
TNFRSF1A-213ENST00000540022 KLHL36Q8N4N3 616 aa16.48■□□□□ 0.23
TNFRSF1A-213ENST00000540022 ZNF75AQ96N20 296 aa16.48■□□□□ 0.23
TNFRSF1A-213ENST00000540022 ISG20L2Q9H9L3 353 aaKnown RBP16.48■□□□□ 0.23
TNFRSF1A-213ENST00000540022 IKZF2Q9UKS7 526 aa16.48■□□□□ 0.23
TNFRSF1A-213ENST00000540022 ERGIC3Q9Y282 383 aa16.48■□□□□ 0.23
TNFRSF1A-213ENST00000540022 CAB39Q9Y376 341 aaPredicted RBP16.48■□□□□ 0.23
TNFRSF1A-213ENST00000540022 SLC25A15Q9Y619 301 aa16.48■□□□□ 0.23
TNFRSF1A-213ENST00000540022 TMEM129A0AVI4 362 aa16.47■□□□□ 0.23
TNFRSF1A-213ENST00000540022 TRIM64CA6NLI5 447 aa16.47■□□□□ 0.23
TNFRSF1A-213ENST00000540022 MYL12BO14950 172 aa16.47■□□□□ 0.23
TNFRSF1A-213ENST00000540022 DOK2O60496 412 aa16.47■□□□□ 0.23
TNFRSF1A-213ENST00000540022 ABHD16AO95870 558 aa16.47■□□□□ 0.23
TNFRSF1A-213ENST00000540022 ATP6V1B1P15313 513 aa16.47■□□□□ 0.23
TNFRSF1A-213ENST00000540022 PCMT1P22061 227 aa16.47■□□□□ 0.23
TNFRSF1A-213ENST00000540022 OPRL1P41146 370 aa16.47■□□□□ 0.23
TNFRSF1A-213ENST00000540022 TFF3Q07654 80 aa16.47■□□□□ 0.23
TNFRSF1A-213ENST00000540022 RAB35Q15286 201 aa16.47■□□□□ 0.23
TNFRSF1A-213ENST00000540022 TAB1Q15750 504 aa16.47■□□□□ 0.23
TNFRSF1A-213ENST00000540022 TBCEQ15813 527 aaPredicted RBP16.47■□□□□ 0.23
TNFRSF1A-213ENST00000540022 TMEM53Q6P2H8 277 aa16.47■□□□□ 0.23
TNFRSF1A-213ENST00000540022 KRT77Q7Z794 578 aa16.47■□□□□ 0.23
TNFRSF1A-213ENST00000540022 P2RY8Q86VZ1 359 aa16.47■□□□□ 0.23
TNFRSF1A-213ENST00000540022 ZNF679Q8IYX0 411 aa16.47■□□□□ 0.23
TNFRSF1A-213ENST00000540022 ZNF485Q8NCK3 441 aa16.47■□□□□ 0.23
TNFRSF1A-213ENST00000540022 CPEB3Q8NE35 698 aaKnown RBP16.47■□□□□ 0.23
TNFRSF1A-213ENST00000540022 SPRYD4Q8WW59 207 aaPredicted RBP16.47■□□□□ 0.23
TNFRSF1A-213ENST00000540022 C4orf36Q96KX1 117 aa16.47■□□□□ 0.23
TNFRSF1A-213ENST00000540022 OBP2BQ9NPH6 170 aa16.47■□□□□ 0.23
TNFRSF1A-213ENST00000540022 ACOT13Q9NPJ3 140 aa16.47■□□□□ 0.23
TNFRSF1A-213ENST00000540022 AMDHD2Q9Y303 409 aa16.47■□□□□ 0.23
TNFRSF1A-213ENST00000540022 ZNF878C9JN71 531 aa16.46■□□□□ 0.23
TNFRSF1A-213ENST00000540022 J3QLW9 94 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms